Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
DEPDC4Q8N2C3 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
DEPDC4Q8N2C3 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
DEPDC4Q8N2C3 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 PPP6R2-204ENST00000395744 3293 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 USP35-204ENST00000530267 2419 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 SIGLEC5-201ENST00000534261 2360 ntAPPRIS P1 TSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 GRIN2C-201ENST00000293190 4261 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 REXO1L2P-201ENST00000425429 2069 ntBASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 BAD-202ENST00000394531 631 ntTSL 3 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 AC091917.2-201ENST00000505002 744 ntBASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 BAD-207ENST00000544785 525 ntTSL 3 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 AC092364.2-202ENST00000597012 1073 ntBASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 SPTSSB-204ENST00000617024 1292 ntBASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 SDC1-201ENST00000254351 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 RSPH9-202ENST00000372165 2586 ntTSL 2 BASIC14.26□□□□□ -0.13
DEPDC4Q8N2C3 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CCP110-203ENST00000396212 5549 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 HSPA7-201ENST00000445535 1927 ntBASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CCNB1-201ENST00000256442 2169 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 VMA21-202ENST00000370361 693 ntTSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 BASP1P1-201ENST00000430708 665 ntBASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 GATD1-206ENST00000526325 756 ntTSL 5 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 AC073575.1-201ENST00000551125 596 ntTSL 3 BASIC14.25□□□□□ -0.13
DEPDC4Q8N2C3 AC073389.1-201ENST00000595595 795 ntBASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms