Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ATXN2L-201ENST00000325215 3788 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 CDC20B-203ENST00000381375 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 CACNA1G-219ENST00000507609 6849 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 EPN3-201ENST00000268933 4071 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 LOXL3-204ENST00000409549 2897 ntTSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 BX255923.2-202ENST00000620833 2874 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 PTPRN2-203ENST00000389418 4706 ntAPPRIS P4 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 ERCC5-201ENST00000355739 5082 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 RAP1A-202ENST00000369709 5024 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 SYK-204ENST00000375754 5005 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 MAGED2-207ENST00000396224 2026 ntAPPRIS P2 TSL 5 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 PRMT7-201ENST00000339507 4238 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 ZNF568-206ENST00000455427 2378 ntTSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 AC016730.1-201ENST00000420828 832 ntTSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 AC009947.2-201ENST00000444014 672 ntBASIC9.4□□□□□ -0.9
LINC00643Q86TS7 MAZ-215ENST00000569978 567 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 AC133552.2-202ENST00000575694 574 ntBASIC9.4□□□□□ -0.9
LINC00643Q86TS7 MIR4313-201ENST00000580760 101 ntBASIC9.4□□□□□ -0.9
LINC00643Q86TS7 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 ZEB2-246ENST00000638128 8932 ntTSL 5 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 LAMA4-207ENST00000424408 5983 ntAPPRIS P3 TSL 5 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 DDR1-262ENST00000508312 3073 ntAPPRIS ALT2 TSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 PPARGC1B-202ENST00000360453 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 ZFAND3-203ENST00000373391 3001 ntTSL 5 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 TCN2-202ENST00000405742 1936 ntAPPRIS ALT2 TSL 5 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 TRHDE-AS1-202ENST00000435350 2966 ntTSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 NOS3-203ENST00000461406 3644 ntTSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 SMG8-201ENST00000300917 3263 ntAPPRIS P1 TSL 1 (best) BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 AL031708.1-201ENST00000454337 5326 ntAPPRIS P1 TSL 2 BASIC9.4□□□□□ -0.9
LINC00643Q86TS7 DACH2-201ENST00000373125 2232 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 ST3GAL5-204ENST00000393808 2236 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 NUMA1-205ENST00000393695 7343 ntAPPRIS P3 TSL 1 (best) BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 CADM1-206ENST00000537058 3550 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 AC125807.2-201ENST00000513358 3514 ntBASIC9.4□□□□□ -0.91
LINC00643Q86TS7 NPLOC4-202ENST00000374747 5538 ntTSL 2 BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 AGGF1P10-201ENST00000635005 2191 ntBASIC9.4□□□□□ -0.91
LINC00643Q86TS7 ARPP21-213ENST00000428373 3150 ntTSL 1 (best) BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 ELMOD3-206ENST00000409890 2492 ntAPPRIS P1 TSL 5 BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 DGKZ-204ENST00000454345 4086 ntAPPRIS ALT2 TSL 1 (best) BASIC9.4□□□□□ -0.91
LINC00643Q86TS7 MEGF8-202ENST00000334370 10966 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 NR3C2-203ENST00000358102 5893 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 GAS8-220ENST00000620723 3308 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 GPR179-203ENST00000616987 7980 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 ZBED2-201ENST00000317012 2311 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 RPL13-201ENST00000311528 4498 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PNMA5-203ENST00000439251 3213 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PRKCE-201ENST00000306156 5650 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PIGT-203ENST00000372689 1971 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 SERPINH1-205ENST00000525876 2283 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PBXIP1-203ENST00000368465 3144 ntAPPRIS ALT2 TSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 LINC00638-201ENST00000555578 2518 ntBASIC9.39□□□□□ -0.91
LINC00643Q86TS7 YWHAQ-202ENST00000381844 2216 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 DDX49-214ENST00000629999 1912 ntTSL 5 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 NXPE3-205ENST00000491511 8074 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TP73-206ENST00000378288 5120 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 EMBP1-203ENST00000622787 4235 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 CACNA1G-217ENST00000507336 7116 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 SLC29A4-203ENST00000406453 2734 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 YIPF3-202ENST00000372422 1576 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 AGAP5-202ENST00000443782 2430 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 AGAP4-203ENST00000448048 2439 ntAPPRIS P2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PCDHB4-201ENST00000194152 3825 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 SP7-201ENST00000303846 2971 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 DPM2-202ENST00000373110 738 ntTSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 FXYD6-202ENST00000524656 1033 ntAPPRIS P2 TSL 3 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC9.39□□□□□ -0.91
LINC00643Q86TS7 AC091167.2-201ENST00000579581 588 ntBASIC9.39□□□□□ -0.91
LINC00643Q86TS7 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC9.39□□□□□ -0.91
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms