Protein–RNA interactions for Protein: P62891

RPL39, 60S ribosomal protein L39, humanhuman

Known RBP Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39P62891 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC10.8□□□□□ -0.68
RPL39P62891 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC10.8□□□□□ -0.68
RPL39P62891 AC079776.4-201ENST00000511039 504 ntBASIC10.8□□□□□ -0.68
RPL39P62891 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC10.8□□□□□ -0.68
RPL39P62891 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
RPL39P62891 MAX-210ENST00000555419 765 ntTSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC10.8□□□□□ -0.68
RPL39P62891 PDPK2P-202ENST00000562415 1191 ntBASIC10.8□□□□□ -0.68
RPL39P62891 CMC2-214ENST00000565925 640 ntTSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC10.8□□□□□ -0.68
RPL39P62891 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC10.8□□□□□ -0.68
RPL39P62891 Z83851.2-201ENST00000609564 659 ntBASIC10.8□□□□□ -0.68
RPL39P62891 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC10.8□□□□□ -0.68
RPL39P62891 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 TCHH-202ENST00000614923 6995 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 RIC1-203ENST00000414202 6774 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
RPL39P62891 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC10.8□□□□□ -0.68
RPL39P62891 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC10.8□□□□□ -0.68
RPL39P62891 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 LATS1-207ENST00000543571 7517 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC10.8□□□□□ -0.68
RPL39P62891 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC10.8□□□□□ -0.68
RPL39P62891 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 ZKSCAN4-201ENST00000377294 2375 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 DMBT1P1-203ENST00000636837 4628 ntBASIC10.8□□□□□ -0.68
RPL39P62891 SMC5-201ENST00000361138 5980 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
RPL39P62891 SDCBP2-AS1-201ENST00000446423 1811 ntTSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 XPNPEP1-201ENST00000322238 2467 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC10.79□□□□□ -0.68
RPL39P62891 CSPG4-201ENST00000308508 8290 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 AC007787.1-201ENST00000588095 1583 ntBASIC10.79□□□□□ -0.68
RPL39P62891 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 FAM90A1-203ENST00000538603 2513 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
RPL39P62891 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TFAMP1-201ENST00000412727 736 ntBASIC10.79□□□□□ -0.68
RPL39P62891 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 KRT18P2-201ENST00000447938 1258 ntBASIC10.79□□□□□ -0.68
RPL39P62891 AC093909.1-201ENST00000504731 1122 ntBASIC10.79□□□□□ -0.68
RPL39P62891 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 SUOX-214ENST00000551841 906 ntTSL 3 BASIC10.79□□□□□ -0.68
RPL39P62891 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC10.79□□□□□ -0.68
RPL39P62891 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC10.79□□□□□ -0.68
RPL39P62891 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 PLCXD2-201ENST00000393934 2063 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 ESPN-201ENST00000377828 3531 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 MKL1-202ENST00000396617 4505 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 CALHM1-201ENST00000329905 3053 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TDP2-201ENST00000341060 2120 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 GUF1-201ENST00000281543 4449 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC10.79□□□□□ -0.68
RPL39P62891 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 PRAMEF25-202ENST00000619661 1840 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
RPL39P62891 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 MFF-204ENST00000353339 2186 ntTSL 5 BASIC10.79□□□□□ -0.68
RPL39P62891 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
RPL39P62891 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms