Protein–RNA interactions for Protein: P56277

CMC4, Cx9C motif-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 68 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMC4P56277 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 AC009090.5-201ENST00000624886 2285 ntBASIC11.3□□□□□ -0.6
CMC4P56277 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CMC4P56277 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 NOL9-201ENST00000377705 6649 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC11.3□□□□□ -0.6
CMC4P56277 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ITGB4-203ENST00000450894 5645 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 BID-213ENST00000615414 2236 ntTSL 5 BASIC11.3□□□□□ -0.6
CMC4P56277 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ZBTB12BP-201ENST00000314232 1122 ntBASIC11.3□□□□□ -0.6
CMC4P56277 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC11.3□□□□□ -0.6
CMC4P56277 GZMB-202ENST00000382540 816 ntTSL 5 BASIC11.3□□□□□ -0.6
CMC4P56277 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 TLE1P1-201ENST00000422965 589 ntBASIC11.3□□□□□ -0.6
CMC4P56277 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 AC245100.3-201ENST00000441281 285 ntBASIC11.3□□□□□ -0.6
CMC4P56277 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC11.3□□□□□ -0.6
CMC4P56277 AC007551.1-201ENST00000457394 519 ntBASIC11.3□□□□□ -0.6
CMC4P56277 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC11.3□□□□□ -0.6
CMC4P56277 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC11.3□□□□□ -0.6
CMC4P56277 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC11.3□□□□□ -0.6
CMC4P56277 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 AC008735.3-201ENST00000596646 500 ntBASIC11.3□□□□□ -0.6
CMC4P56277 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 IGHV3-72-202ENST00000621503 303 ntBASIC11.3□□□□□ -0.6
CMC4P56277 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 AC023157.3-201ENST00000619086 2088 ntBASIC11.3□□□□□ -0.6
CMC4P56277 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ZBED1P1-201ENST00000502364 1930 ntBASIC11.3□□□□□ -0.6
CMC4P56277 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC11.3□□□□□ -0.6
CMC4P56277 USE1-206ENST00000595101 1776 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC11.3□□□□□ -0.6
CMC4P56277 TMEM230-201ENST00000202834 1472 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC11.3□□□□□ -0.6
CMC4P56277 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 AC006058.4-201ENST00000624016 1670 ntBASIC11.3□□□□□ -0.6
CMC4P56277 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC11.3□□□□□ -0.6
CMC4P56277 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.3□□□□□ -0.6
CMC4P56277 ABR-203ENST00000536794 2213 ntTSL 2 BASIC11.29□□□□□ -0.6
CMC4P56277 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
CMC4P56277 ABCC6-201ENST00000205557 5747 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC11.29□□□□□ -0.6
CMC4P56277 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC11.29□□□□□ -0.6
CMC4P56277 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC11.29□□□□□ -0.6
CMC4P56277 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC11.29□□□□□ -0.6
CMC4P56277 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC11.29□□□□□ -0.6
CMC4P56277 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC11.29□□□□□ -0.6
CMC4P56277 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC11.29□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms