Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.33■□□□□ 0.04
CHRNA4P43681 USP28-214ENST00000545540 3431 ntTSL 2 BASIC15.33■□□□□ 0.04
CHRNA4P43681 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
CHRNA4P43681 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC15.33■□□□□ 0.04
CHRNA4P43681 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
CHRNA4P43681 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
CHRNA4P43681 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC023090.2-201ENST00000625182 2110 ntBASIC15.32■□□□□ 0.04
CHRNA4P43681 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC15.32■□□□□ 0.04
CHRNA4P43681 NUS1P3-201ENST00000423502 862 ntBASIC15.32■□□□□ 0.04
CHRNA4P43681 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC093433.1-201ENST00000458048 571 ntBASIC15.32■□□□□ 0.04
CHRNA4P43681 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC15.32■□□□□ 0.04
CHRNA4P43681 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC15.32■□□□□ 0.04
CHRNA4P43681 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC006449.3-201ENST00000620144 563 ntTSL 4 BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC025048.6-201ENST00000634326 1161 ntBASIC15.32■□□□□ 0.04
CHRNA4P43681 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 KRT8P14-201ENST00000414254 1442 ntBASIC15.32■□□□□ 0.04
CHRNA4P43681 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.32■□□□□ 0.04
CHRNA4P43681 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
CHRNA4P43681 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
CHRNA4P43681 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC15.32■□□□□ 0.04
CHRNA4P43681 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC15.31■□□□□ 0.04
CHRNA4P43681 AL161772.1-201ENST00000610494 4412 ntBASIC15.31■□□□□ 0.04
CHRNA4P43681 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC15.31■□□□□ 0.04
CHRNA4P43681 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 INTS4P1-203ENST00000641008 3683 ntBASIC15.31■□□□□ 0.04
CHRNA4P43681 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
CHRNA4P43681 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC15.31■□□□□ 0.04
CHRNA4P43681 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC15.31■□□□□ 0.04
CHRNA4P43681 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 PCDHA3-202ENST00000532566 4594 ntBASIC15.31■□□□□ 0.04
CHRNA4P43681 DNAJA1-201ENST00000330899 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC15.31■□□□□ 0.04
CHRNA4P43681 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC15.31■□□□□ 0.04
CHRNA4P43681 AP005018.1-201ENST00000525475 301 ntBASIC15.31■□□□□ 0.04
CHRNA4P43681 ENPP7P5-201ENST00000541031 1031 ntBASIC15.31■□□□□ 0.04
CHRNA4P43681 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC15.31■□□□□ 0.04
CHRNA4P43681 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.31■□□□□ 0.04
CHRNA4P43681 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC15.31■□□□□ 0.04
CHRNA4P43681 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.31■□□□□ 0.04
CHRNA4P43681 MIR3197-201ENST00000582241 73 ntBASIC15.31■□□□□ 0.04
CHRNA4P43681 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
CHRNA4P43681 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
CHRNA4P43681 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
CHRNA4P43681 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC15.31■□□□□ 0.04
CHRNA4P43681 MFSD4B-201ENST00000368847 5958 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms