Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 AL359881.3-201ENST00000602640 1721 ntBASIC15.34■□□□□ 0.05
PTPN4P29074 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 SUOX-201ENST00000266971 2364 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 GPR37-201ENST00000303921 3021 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 PHKG1-210ENST00000537360 2139 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 CENPM-206ENST00000407253 818 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC15.34■□□□□ 0.05
PTPN4P29074 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.34■□□□□ 0.05
PTPN4P29074 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.34■□□□□ 0.05
PTPN4P29074 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 MIR4321-201ENST00000592276 80 ntBASIC15.34■□□□□ 0.05
PTPN4P29074 AC008738.7-201ENST00000609744 511 ntBASIC15.34■□□□□ 0.05
PTPN4P29074 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
PTPN4P29074 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.34■□□□□ 0.05
PTPN4P29074 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC15.34■□□□□ 0.05
PTPN4P29074 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN4P29074 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN4P29074 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN4P29074 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC15.33■□□□□ 0.05
PTPN4P29074 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.05
PTPN4P29074 AC097359.2-201ENST00000604992 2389 ntBASIC15.33■□□□□ 0.04
PTPN4P29074 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 OSBPL8-203ENST00000393250 3157 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PTPN4P29074 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 SIPA1-203ENST00000527525 3235 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN4P29074 AC004890.2-205ENST00000416232 2804 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN4P29074 PHTF1-204ENST00000369604 3273 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 AC018892.3-201ENST00000623986 2499 ntBASIC15.33■□□□□ 0.04
PTPN4P29074 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN4P29074 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.33■□□□□ 0.04
PTPN4P29074 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN4P29074 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN4P29074 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN4P29074 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.33■□□□□ 0.04
PTPN4P29074 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC15.33■□□□□ 0.04
PTPN4P29074 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN4P29074 AL596325.1-201ENST00000563991 1082 ntBASIC15.33■□□□□ 0.04
PTPN4P29074 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.33■□□□□ 0.04
PTPN4P29074 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN4P29074 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
PTPN4P29074 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 CYB5R3-205ENST00000407623 2153 ntTSL 3 BASIC15.33■□□□□ 0.04
PTPN4P29074 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PTPN4P29074 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.33■□□□□ 0.04
PTPN4P29074 FXYD6-207ENST00000527717 1799 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
PTPN4P29074 FAM120A-202ENST00000375389 3585 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 ZNF655-212ENST00000424881 4666 ntAPPRIS ALT2 TSL 2 BASIC15.33■□□□□ 0.04
PTPN4P29074 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
PTPN4P29074 CICP17-201ENST00000418553 2377 ntBASIC15.33■□□□□ 0.04
PTPN4P29074 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 SAFB2-201ENST00000252542 3371 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
PTPN4P29074 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
PTPN4P29074 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms