Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC14.22□□□□□ -0.13
COL5A1P20908 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 RHD-202ENST00000342055 1557 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 HORMAD1-201ENST00000322343 1771 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 RAN-210ENST00000541630 1475 ntTSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 IL23A-201ENST00000228534 1046 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 TSPY25P-201ENST00000429463 745 ntBASIC14.22□□□□□ -0.13
COL5A1P20908 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC14.22□□□□□ -0.13
COL5A1P20908 RPSAP15-201ENST00000448168 861 ntBASIC14.22□□□□□ -0.13
COL5A1P20908 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC14.22□□□□□ -0.13
COL5A1P20908 SNHG14-209ENST00000456576 544 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 UPK1B-205ENST00000497685 981 ntTSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC14.22□□□□□ -0.13
COL5A1P20908 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
COL5A1P20908 SALL4P5-201ENST00000419001 1760 ntBASIC14.22□□□□□ -0.13
COL5A1P20908 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 AC138035.3-201ENST00000622706 2791 ntBASIC14.22□□□□□ -0.13
COL5A1P20908 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
COL5A1P20908 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
COL5A1P20908 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC14.21□□□□□ -0.13
COL5A1P20908 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.21□□□□□ -0.13
COL5A1P20908 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 CD48-203ENST00000613788 1500 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC14.21□□□□□ -0.13
COL5A1P20908 AC211486.1-201ENST00000275590 980 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC14.21□□□□□ -0.13
COL5A1P20908 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC14.21□□□□□ -0.13
COL5A1P20908 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC14.21□□□□□ -0.13
COL5A1P20908 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC14.21□□□□□ -0.13
COL5A1P20908 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC14.21□□□□□ -0.13
COL5A1P20908 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.21□□□□□ -0.13
COL5A1P20908 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC14.21□□□□□ -0.13
COL5A1P20908 LINC01783-202ENST00000614408 828 ntBASIC14.21□□□□□ -0.13
COL5A1P20908 BX284668.2-205ENST00000619677 828 ntBASIC14.21□□□□□ -0.13
COL5A1P20908 AL359258.3-201ENST00000622910 2331 ntBASIC14.21□□□□□ -0.13
COL5A1P20908 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
COL5A1P20908 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
COL5A1P20908 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL5A1P20908 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC14.21□□□□□ -0.14
COL5A1P20908 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.21□□□□□ -0.14
COL5A1P20908 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.21□□□□□ -0.14
COL5A1P20908 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
COL5A1P20908 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC14.2□□□□□ -0.14
COL5A1P20908 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.2□□□□□ -0.14
COL5A1P20908 SUPT4H1-201ENST00000225504 1489 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
COL5A1P20908 Metazoa_SRP.6-201ENST00000366384 298 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC14.2□□□□□ -0.14
COL5A1P20908 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.2□□□□□ -0.14
COL5A1P20908 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC14.2□□□□□ -0.14
COL5A1P20908 MRPL22P1-201ENST00000505398 616 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 AC114947.1-202ENST00000514136 344 ntBASIC14.2□□□□□ -0.14
COL5A1P20908 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms