Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AP5Z1-201ENST00000348624 2901 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 ATN1-201ENST00000356654 4351 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 ANKMY1-210ENST00000406958 2396 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 OPN4-202ENST00000372071 2401 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 APOB-202ENST00000399256 3128 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 COL1A2-213ENST00000620463 4523 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 CYB5D1-203ENST00000571846 1870 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 IGFN1-201ENST00000295591 4439 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 SREBF1-205ENST00000395757 3696 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AKR1C7P-201ENST00000305623 895 ntBASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AC004870.1-201ENST00000315132 882 ntBASIC11.49□□□□□ -0.57
HLA-DQA1P01909 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 DUSP5P1-201ENST00000441325 1139 ntBASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AC012184.2-203ENST00000443119 2110 ntAPPRIS P1 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 RNF151-202ENST00000569210 853 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 SDCCAG3P1-201ENST00000589292 1150 ntBASIC11.49□□□□□ -0.57
HLA-DQA1P01909 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 MTDHP4-201ENST00000600287 670 ntBASIC11.49□□□□□ -0.57
HLA-DQA1P01909 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AL450472.2-201ENST00000603663 1156 ntBASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AC004899.2-201ENST00000622993 3860 ntBASIC11.49□□□□□ -0.57
HLA-DQA1P01909 GNAI2-201ENST00000266027 2169 ntTSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 CDKL3-206ENST00000521118 2160 ntAPPRIS ALT2 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 EPRS-201ENST00000366923 5014 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 DUOX2-205ENST00000603300 6345 ntAPPRIS P2 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 SLC26A8-201ENST00000355574 3463 ntAPPRIS P1 TSL 2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 ABCB8-202ENST00000358849 4683 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 BTRC-202ENST00000370187 6134 ntAPPRIS P4 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 HLA-DPA1-242ENST00000419277 1704 ntAPPRIS P2 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 HMOX2-216ENST00000613539 1703 ntTSL 5 BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 KLHL8-201ENST00000273963 5621 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
HLA-DQA1P01909 CR382287.2-201ENST00000623370 1942 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 CYTH2-203ENST00000427476 4606 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 GDPD5-201ENST00000336898 3523 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 LRRC41-208ENST00000617760 2158 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 MYH14-201ENST00000262269 3848 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 COL6A3-203ENST00000353578 9963 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AC083964.2-201ENST00000623988 2396 ntBASIC11.48□□□□□ -0.57
HLA-DQA1P01909 CLCNKA-202ENST00000375692 2581 ntAPPRIS ALT1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 NDNF-201ENST00000379692 2885 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ATG7-201ENST00000354449 4959 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 LIG1-202ENST00000427526 3027 ntAPPRIS ALT2 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 SP8-203ENST00000617581 3496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 RAB17-203ENST00000409576 466 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 AL450487.1-201ENST00000426799 995 ntBASIC11.48□□□□□ -0.57
HLA-DQA1P01909 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 FGFR3P6-201ENST00000457012 610 ntBASIC11.48□□□□□ -0.57
HLA-DQA1P01909 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 SART3-203ENST00000546611 1184 ntBASIC11.48□□□□□ -0.57
HLA-DQA1P01909 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC11.48□□□□□ -0.57
HLA-DQA1P01909 BMF-207ENST00000559701 630 ntTSL 3 BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms