Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SIX3O95343 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.88□□□□□ -0.03
SIX3O95343 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
SIX3O95343 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.88□□□□□ -0.03
SIX3O95343 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC14.88□□□□□ -0.03
SIX3O95343 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.88□□□□□ -0.03
SIX3O95343 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 TPO-201ENST00000329066 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 DRD5P1-201ENST00000456605 1438 ntBASIC14.88□□□□□ -0.03
SIX3O95343 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
SIX3O95343 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
SIX3O95343 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 AP001627.1-201ENST00000437426 1754 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.88□□□□□ -0.03
SIX3O95343 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 PDHX-201ENST00000227868 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 MKS1-202ENST00000393119 2397 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.88□□□□□ -0.03
SIX3O95343 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
SIX3O95343 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
SIX3O95343 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 CKM-201ENST00000221476 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC14.87□□□□□ -0.03
SIX3O95343 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
SIX3O95343 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC14.87□□□□□ -0.03
SIX3O95343 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 AL137783.1-201ENST00000623494 1896 ntBASIC14.87□□□□□ -0.03
SIX3O95343 PHF3-209ENST00000509330 2969 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC14.87□□□□□ -0.03
SIX3O95343 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC14.87□□□□□ -0.03
SIX3O95343 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 FAM86LP-201ENST00000478302 853 ntBASIC14.87□□□□□ -0.03
SIX3O95343 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.87□□□□□ -0.03
SIX3O95343 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.87□□□□□ -0.03
SIX3O95343 AC107373.2-201ENST00000607735 490 ntBASIC14.87□□□□□ -0.03
SIX3O95343 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 AL158070.2-201ENST00000623713 1621 ntBASIC14.87□□□□□ -0.03
SIX3O95343 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC14.87□□□□□ -0.03
SIX3O95343 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 ZPBP2-202ENST00000377940 2177 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
SIX3O95343 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.87□□□□□ -0.03
SIX3O95343 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 ALDH4A1-205ENST00000538309 1940 ntTSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC14.86□□□□□ -0.03
SIX3O95343 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
SIX3O95343 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 71.1 ms