Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 FTLP10-202ENST00000505798 471 ntBASIC18.05■□□□□ 0.48
MBD4O95243 KCNK16-205ENST00000507712 889 ntTSL 3 BASIC18.05■□□□□ 0.48
MBD4O95243 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC18.05■□□□□ 0.48
MBD4O95243 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
MBD4O95243 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC18.05■□□□□ 0.48
MBD4O95243 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
MBD4O95243 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
MBD4O95243 AC068587.6-202ENST00000641839 5619 ntBASIC18.04■□□□□ 0.48
MBD4O95243 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 CALCOCO2-211ENST00000508679 1396 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 GSN-215ENST00000545652 2428 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
MBD4O95243 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 FKBP4P6-201ENST00000457486 1332 ntBASIC18.04■□□□□ 0.48
MBD4O95243 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC18.04■□□□□ 0.48
MBD4O95243 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 INE2-201ENST00000630399 1874 ntBASIC18.04■□□□□ 0.48
MBD4O95243 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
MBD4O95243 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 AL355994.2-201ENST00000447882 704 ntBASIC18.04■□□□□ 0.48
MBD4O95243 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 RIT1-205ENST00000539040 919 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC18.04■□□□□ 0.48
MBD4O95243 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC18.04■□□□□ 0.48
MBD4O95243 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
MBD4O95243 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.04■□□□□ 0.48
MBD4O95243 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC18.03■□□□□ 0.48
MBD4O95243 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
MBD4O95243 TCAF2P1-201ENST00000291129 2421 ntBASIC18.03■□□□□ 0.48
MBD4O95243 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 RAB5B-202ENST00000448789 1530 ntTSL 2 BASIC18.03■□□□□ 0.48
MBD4O95243 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 TUBB1P2-201ENST00000422712 1306 ntBASIC18.03■□□□□ 0.48
MBD4O95243 TUBB1P1-201ENST00000503144 1300 ntBASIC18.03■□□□□ 0.48
MBD4O95243 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC18.03■□□□□ 0.48
MBD4O95243 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
MBD4O95243 MIR1908-201ENST00000410394 80 ntBASIC18.03■□□□□ 0.48
MBD4O95243 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC18.03■□□□□ 0.48
MBD4O95243 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC18.03■□□□□ 0.48
MBD4O95243 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC18.03■□□□□ 0.48
MBD4O95243 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC18.03■□□□□ 0.48
MBD4O95243 DHRS7C-202ENST00000571134 984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC18.03■□□□□ 0.48
MBD4O95243 RN7SL560P-201ENST00000577943 264 ntBASIC18.03■□□□□ 0.48
MBD4O95243 RN7SL713P-201ENST00000582127 302 ntBASIC18.03■□□□□ 0.48
MBD4O95243 AC003070.2-201ENST00000589730 386 ntTSL 3 BASIC18.03■□□□□ 0.48
MBD4O95243 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC18.03■□□□□ 0.48
MBD4O95243 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC18.03■□□□□ 0.48
MBD4O95243 MYB-201ENST00000316528 3571 ntTSL 5 BASIC18.03■□□□□ 0.48
MBD4O95243 MYB-241ENST00000616088 3573 ntTSL 5 BASIC18.03■□□□□ 0.48
MBD4O95243 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
MBD4O95243 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms