Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4BO75351 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
VPS4BO75351 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 COCH-203ENST00000460581 2688 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4BO75351 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 AL133267.1-201ENST00000398220 340 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS4BO75351 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 AC092658.1-201ENST00000505836 891 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.97□□□□□ -0.01
VPS4BO75351 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 AC009407.1-201ENST00000568958 598 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 AC132938.2-201ENST00000579188 680 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 AP000845.1-201ENST00000581677 2131 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.97□□□□□ -0.01
VPS4BO75351 TEX28P1-201ENST00000613479 1221 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 TEX28P2-201ENST00000617764 1221 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 AL591163.1-201ENST00000641757 987 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.97□□□□□ -0.01
VPS4BO75351 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC14.97□□□□□ -0.01
VPS4BO75351 RAF1-205ENST00000442415 3085 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4BO75351 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 EOMES-201ENST00000295743 3386 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC14.97□□□□□ -0.01
VPS4BO75351 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
VPS4BO75351 IMPDH1P4-201ENST00000445028 1534 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 SNX18-202ENST00000343017 3140 ntBASIC14.97□□□□□ -0.01
VPS4BO75351 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4BO75351 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 PGF-202ENST00000405431 666 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 AC112492.5-201ENST00000421897 457 ntBASIC14.96□□□□□ -0.01
VPS4BO75351 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4BO75351 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
VPS4BO75351 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.96□□□□□ -0.01
VPS4BO75351 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC14.96□□□□□ -0.01
VPS4BO75351 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4BO75351 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4BO75351 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4BO75351 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.96□□□□□ -0.01
VPS4BO75351 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.96□□□□□ -0.01
VPS4BO75351 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 TM4SF19-AS1-203ENST00000452051 1829 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC14.96□□□□□ -0.01
VPS4BO75351 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.96□□□□□ -0.01
VPS4BO75351 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.96□□□□□ -0.02
VPS4BO75351 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
VPS4BO75351 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.02
VPS4BO75351 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.02
VPS4BO75351 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
VPS4BO75351 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.02
VPS4BO75351 PVR-202ENST00000344956 3166 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.95□□□□□ -0.02
VPS4BO75351 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
VPS4BO75351 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC14.95□□□□□ -0.02
VPS4BO75351 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms