Protein–RNA interactions for Protein: O15353

FOXN1, Forkhead box protein N1, humanhuman

Predictions only

Length 648 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN1O15353 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 CDK7-214ENST00000626796 358 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXN1O15353 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC18.08■□□□□ 0.48
FOXN1O15353 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC18.08■□□□□ 0.48
FOXN1O15353 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC18.08■□□□□ 0.48
FOXN1O15353 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.08■□□□□ 0.48
FOXN1O15353 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
FOXN1O15353 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
FOXN1O15353 AC011477.6-201ENST00000604980 1927 ntBASIC18.08■□□□□ 0.48
FOXN1O15353 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
FOXN1O15353 AC020658.6-201ENST00000623564 1870 ntBASIC18.07■□□□□ 0.48
FOXN1O15353 DRD5P1-201ENST00000456605 1438 ntBASIC18.07■□□□□ 0.48
FOXN1O15353 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXN1O15353 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN1O15353 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN1O15353 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
FOXN1O15353 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN1O15353 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC18.07■□□□□ 0.48
FOXN1O15353 RPL7P35-201ENST00000446943 740 ntBASIC18.07■□□□□ 0.48
FOXN1O15353 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC18.07■□□□□ 0.48
FOXN1O15353 RBM8B-201ENST00000555532 525 ntBASIC18.07■□□□□ 0.48
FOXN1O15353 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.07■□□□□ 0.48
FOXN1O15353 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
FOXN1O15353 AL805961.1-203ENST00000641078 1258 ntBASIC18.07■□□□□ 0.48
FOXN1O15353 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
FOXN1O15353 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 EHF-212ENST00000533754 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
FOXN1O15353 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
FOXN1O15353 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
FOXN1O15353 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.06■□□□□ 0.48
FOXN1O15353 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN1O15353 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN1O15353 BID-213ENST00000615414 2236 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
FOXN1O15353 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 DPM3-202ENST00000368399 517 ntBASIC18.06■□□□□ 0.48
FOXN1O15353 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 SLC16A6P1-201ENST00000413214 1059 ntBASIC18.06■□□□□ 0.48
FOXN1O15353 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN1O15353 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN1O15353 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.06■□□□□ 0.48
FOXN1O15353 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 KRT16P3-202ENST00000580113 1012 ntTSL 3 BASIC18.06■□□□□ 0.48
FOXN1O15353 KRT16P1-203ENST00000581027 1012 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 MIR4649-201ENST00000582839 64 ntBASIC18.06■□□□□ 0.48
FOXN1O15353 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
FOXN1O15353 IRF3-225ENST00000600022 882 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 NDUFB5-216ENST00000611971 951 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN1O15353 AC018695.6-201ENST00000614011 534 ntBASIC18.06■□□□□ 0.48
FOXN1O15353 ETV2-207ENST00000619399 994 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC18.06■□□□□ 0.48
FOXN1O15353 TSPY26P-202ENST00000565928 3884 ntBASIC18.06■□□□□ 0.48
FOXN1O15353 GDF2-201ENST00000581492 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC18.06■□□□□ 0.48
FOXN1O15353 ANKRD26P3-201ENST00000454044 2748 ntBASIC18.06■□□□□ 0.48
FOXN1O15353 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC18.06■□□□□ 0.48
FOXN1O15353 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
FOXN1O15353 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXN1O15353 TK1-201ENST00000301634 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXN1O15353 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
FOXN1O15353 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.05■□□□□ 0.48
FOXN1O15353 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
FOXN1O15353 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms