Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 EDEM2-202ENST00000374492 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CCDC42Q96M95 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
CCDC42Q96M95 SEPT9-228ENST00000590294 2816 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 SAMD11P1-201ENST00000571429 661 ntBASIC16.46■□□□□ 0.23
CCDC42Q96M95 MIR3687-2-201ENST00000577708 61 ntBASIC16.46■□□□□ 0.23
CCDC42Q96M95 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 AC074044.1-201ENST00000609673 707 ntBASIC16.46■□□□□ 0.23
CCDC42Q96M95 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 MIR3687-1-201ENST00000614492 61 ntBASIC16.46■□□□□ 0.23
CCDC42Q96M95 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 UBXN11-204ENST00000374217 1846 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 MAGEA2-209ENST00000623806 2025 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 ANKRD13B-201ENST00000394859 3214 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 ZNF331-217ENST00000512387 2130 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 ABR-205ENST00000544583 5595 ntTSL 2 BASIC16.46■□□□□ 0.23
CCDC42Q96M95 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CCDC42Q96M95 PORCN-201ENST00000326194 1755 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC42Q96M95 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC42Q96M95 TMEM5-205ENST00000537373 1966 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
CCDC42Q96M95 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC16.46■□□□□ 0.22
CCDC42Q96M95 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 ACOT7-210ENST00000608083 1403 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 AC041040.2-201ENST00000622926 2899 ntBASIC16.45■□□□□ 0.22
CCDC42Q96M95 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 KCTD10-208ENST00000540089 3096 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 MLLT11-201ENST00000368921 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CCDC42Q96M95 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
CCDC42Q96M95 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 MTMR6-201ENST00000381801 5659 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 AC136759.1-202ENST00000530858 2194 ntBASIC16.44■□□□□ 0.22
CCDC42Q96M95 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC16.44■□□□□ 0.22
CCDC42Q96M95 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.44■□□□□ 0.22
CCDC42Q96M95 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CCDC42Q96M95 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CCDC42Q96M95 R3HDM2P2-201ENST00000401880 2116 ntBASIC16.44■□□□□ 0.22
CCDC42Q96M95 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.44■□□□□ 0.22
CCDC42Q96M95 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC42Q96M95 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC42Q96M95 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC16.44■□□□□ 0.22
CCDC42Q96M95 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms