Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TTC28Q96AY4 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TTC28Q96AY4 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TTC28Q96AY4 PDE4DIP-202ENST00000369347 1137 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TTC28Q96AY4 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TTC28Q96AY4 TAC3-209ENST00000458521 816 ntAPPRIS P1 TSL 1 (best) BASIC14.99□□□□□ -0.01
TTC28Q96AY4 AC008026.2-201ENST00000495438 348 ntBASIC14.99□□□□□ -0.01
TTC28Q96AY4 RORA-AS1-201ENST00000501579 761 ntTSL 5 BASIC14.99□□□□□ -0.01
TTC28Q96AY4 AC113133.1-201ENST00000522388 1088 ntTSL 2 BASIC14.99□□□□□ -0.01
TTC28Q96AY4 GABARAPL1-213ENST00000544284 531 ntTSL 3 BASIC14.99□□□□□ -0.01
TTC28Q96AY4 LINC01490-202ENST00000551399 1260 ntTSL 1 (best) BASIC14.99□□□□□ -0.01
TTC28Q96AY4 ZFP36-201ENST00000594045 690 ntTSL 3 BASIC14.99□□□□□ -0.01
TTC28Q96AY4 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC14.99□□□□□ -0.01
TTC28Q96AY4 PNPT1-207ENST00000625249 216 ntTSL 5 BASIC14.99□□□□□ -0.01
TTC28Q96AY4 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.99□□□□□ -0.01
TTC28Q96AY4 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 AC018470.1-201ENST00000624790 3129 ntBASIC14.98□□□□□ -0.01
TTC28Q96AY4 TMEM9-203ENST00000367333 1564 ntAPPRIS P3 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 NCR1-204ENST00000357397 594 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 NAT8B-201ENST00000377712 765 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 KRTAP2-3-201ENST00000391418 875 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 BX284668.5-201ENST00000422124 406 ntTSL 2 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 FAM157A-201ENST00000437428 1141 ntTSL 3 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 MIATNB-206ENST00000444388 918 ntTSL 3 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 LINC01500-204ENST00000556815 752 ntTSL 3 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 MYMX-201ENST00000573382 817 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 SHBG-217ENST00000576478 639 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 AC007250.1-201ENST00000608934 338 ntBASIC14.98□□□□□ -0.01
TTC28Q96AY4 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 AC139713.2-207ENST00000641556 1292 ntBASIC14.98□□□□□ -0.01
TTC28Q96AY4 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 MLLT3-210ENST00000630269 2040 ntAPPRIS ALT1 TSL 2 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC14.98□□□□□ -0.01
TTC28Q96AY4 GOLGA6L16P-201ENST00000441780 1299 ntBASIC14.98□□□□□ -0.01
TTC28Q96AY4 IGKV1D-43-201ENST00000468879 532 ntAPPRIS P1 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 SEPHS2P1-201ENST00000511618 1162 ntBASIC14.98□□□□□ -0.01
TTC28Q96AY4 AL031705.1-201ENST00000566922 682 ntTSL 3 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 AC245369.7-201ENST00000631386 350 ntBASIC14.98□□□□□ -0.01
TTC28Q96AY4 PAX6-237ENST00000638696 1203 ntTSL 5 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 PAX6-238ENST00000638755 1161 ntTSL 5 BASIC14.98□□□□□ -0.01
TTC28Q96AY4 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 CITED1-209ENST00000453707 998 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 RN7SL672P-201ENST00000474091 317 ntBASIC14.97□□□□□ -0.01
TTC28Q96AY4 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 IMMP1L-202ENST00000526776 469 ntTSL 3 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 AC016266.1-201ENST00000557558 729 ntTSL 3 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 MIR4746-201ENST00000579802 71 ntBASIC14.97□□□□□ -0.01
TTC28Q96AY4 AC005786.2-201ENST00000592368 369 ntTSL 3 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 STAR-201ENST00000276449 1929 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 TRIM45-202ENST00000369461 2415 ntTSL 5 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 GJB1-203ENST00000374029 1587 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC14.97□□□□□ -0.01
TTC28Q96AY4 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 EXOSC7-201ENST00000265564 1055 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
TTC28Q96AY4 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC14.97□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms