Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 GMEB2-201ENST00000266068 4559 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 FAM86HP-204ENST00000513466 959 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PHTF1-203ENST00000369600 3075 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 THUMPD3-AS1-202ENST00000468186 3253 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TBC1D2-201ENST00000342112 3046 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AXIN2-201ENST00000307078 4259 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 VILL-207ENST00000465644 1857 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TLE3-214ENST00000558939 6004 ntAPPRIS P4 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SPTLC1P5-201ENST00000450718 252 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC009542.2-202ENST00000619004 1067 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KCNMA1-241ENST00000638606 3852 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KCNMA1-279ENST00000640182 3852 ntAPPRIS ALT2 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KCNC2-202ENST00000350228 3344 ntAPPRIS ALT2 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 FOXM1-203ENST00000361953 3370 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 HERC6-201ENST00000264346 3779 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AL592424.1-201ENST00000563624 1536 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 CD74-212ENST00000524315 584 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 RPL8-205ENST00000527914 551 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ST7L-207ENST00000369669 1743 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SLC36A4-201ENST00000326402 6012 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 GGT3P-204ENST00000453783 1664 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AGAP2-203ENST00000547588 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 FOS-206ENST00000555347 1280 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 DUX4L45-201ENST00000566406 1057 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ATF5-205ENST00000600336 682 ntTSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AL139011.1-202ENST00000642063 584 ntBASIC4.75□□□□□ -1.65
SYNE1Q8NF91 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SYNE1Q8NF91 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PSMC1-201ENST00000261303 4448 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 RETREG3-201ENST00000309428 3759 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 CSF1-201ENST00000329608 4210 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC4.74□□□□□ -1.65
SYNE1Q8NF91 FAM49B-215ENST00000519824 3798 ntAPPRIS P1 TSL 2 BASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms