Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 NRP2-204ENST00000360409 6662 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 CENPM-205ENST00000404067 905 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 CENPM-206ENST00000407253 818 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AC067863.1-201ENST00000494933 530 ntBASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 TIMM17BP1-201ENST00000545713 516 ntBASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AC010336.2-201ENST00000564226 506 ntBASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 TRPM2-204ENST00000397932 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AC087499.5-201ENST00000452760 1342 ntBASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC13.34□□□□□ -0.27
CCDC54Q8NEL0 GAS6-AS1-201ENST00000458001 7169 ntTSL 5 BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.33□□□□□ -0.27
CCDC54Q8NEL0 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 FP325330.2-201ENST00000624219 5630 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 AP000845.1-201ENST00000581677 2131 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 KRT18P64-201ENST00000434946 1219 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 AC004066.1-201ENST00000502488 802 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 AC025678.2-201ENST00000562061 970 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 SAMD11P1-201ENST00000571429 661 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 INO80C-210ENST00000590757 595 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 AC004461.2-201ENST00000629517 803 ntBASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 NOX5-201ENST00000260364 8592 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 SLC12A7-201ENST00000264930 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.33□□□□□ -0.28
CCDC54Q8NEL0 PDGFRB-201ENST00000261799 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms