Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 POLD4-208ENST00000532830 904 ntTSL 3 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 CMC2-224ENST00000630396 481 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC20.18■□□□□ 0.82
KRT28Q7Z3Y7 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 ADCYAP1R1-204ENST00000409489 1761 ntTSL 5 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 SALL4P5-201ENST00000419001 1760 ntBASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 LAMA4-209ENST00000453937 645 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 RN7SL81P-201ENST00000493781 261 ntBASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 C2orf69P1-201ENST00000563532 1093 ntBASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 MIR3180-2-201ENST00000581748 88 ntBASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 LILRP1-201ENST00000444199 1370 ntBASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
KRT28Q7Z3Y7 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 NFYA-202ENST00000353205 1660 ntTSL 5 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 ZBED1P1-201ENST00000502364 1930 ntBASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 RNA5SP359-201ENST00000364838 113 ntBASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 KRT18P36-201ENST00000411618 1276 ntBASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 TCERG1L-AS1-201ENST00000436942 472 ntTSL 2 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 MIR503HG-202ENST00000440570 760 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 AC090502.4-201ENST00000551714 1386 ntBASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 TMEM144-209ENST00000509278 1633 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 IL9RP3-201ENST00000442856 1674 ntBASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC20.16■□□□□ 0.82
KRT28Q7Z3Y7 WT1-209ENST00000530998 2421 ntTSL 2 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 HSPB7-203ENST00000406363 648 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 ORAOV1P1-201ENST00000503108 395 ntBASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 GCOM2-201ENST00000509133 1104 ntBASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 TMBIM7P-202ENST00000641474 1516 ntBASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 CSRP1-201ENST00000340006 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
KRT28Q7Z3Y7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
KRT28Q7Z3Y7 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
KRT28Q7Z3Y7 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
KRT28Q7Z3Y7 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 147.1 ms