Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 ODF2L-204ENST00000370566 2155 ntAPPRIS P1 TSL 2 BASIC12.32□□□□□ -0.44
VPS13CQ709C8 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.32□□□□□ -0.44
VPS13CQ709C8 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 NPFF-201ENST00000267017 592 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 FAM86KP-201ENST00000509817 987 ntBASIC12.31□□□□□ -0.44
VPS13CQ709C8 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 AC068867.1-201ENST00000559855 150 ntBASIC12.31□□□□□ -0.44
VPS13CQ709C8 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 TXNDC17-208ENST00000574838 746 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 AL109837.1-201ENST00000603272 613 ntBASIC12.31□□□□□ -0.44
VPS13CQ709C8 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 PAK1-201ENST00000278568 2543 ntTSL 2 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 UROS-201ENST00000368774 744 ntTSL 2 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 AL645933.1-201ENST00000440087 609 ntBASIC12.31□□□□□ -0.44
VPS13CQ709C8 TGFB3-204ENST00000556285 1280 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 UCN2-201ENST00000273610 1481 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 NOP2-222ENST00000617555 2017 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 LINC01815-202ENST00000641468 1409 ntBASIC12.31□□□□□ -0.44
VPS13CQ709C8 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 FAM27E5-201ENST00000426869 682 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 PSMD4P1-201ENST00000433951 1109 ntBASIC12.31□□□□□ -0.44
VPS13CQ709C8 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 C2-205ENST00000418949 1658 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 SUOX-204ENST00000394115 2394 ntAPPRIS P1 TSL 2 BASIC12.31□□□□□ -0.44
VPS13CQ709C8 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.31□□□□□ -0.44
VPS13CQ709C8 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 MBP-238ENST00000580402 915 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 RBFOX3-206ENST00000582043 1143 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 MIR2392-201ENST00000584881 84 ntBASIC12.3□□□□□ -0.44
VPS13CQ709C8 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AC007388.1-204ENST00000449569 2517 ntTSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 SLC37A4-201ENST00000330775 2102 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 FES-203ENST00000394302 2133 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AC004837.1-201ENST00000446267 564 ntBASIC12.3□□□□□ -0.44
VPS13CQ709C8 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 AC025183.3-201ENST00000623526 1482 ntBASIC12.3□□□□□ -0.44
VPS13CQ709C8 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
VPS13CQ709C8 TNFSF11-201ENST00000239849 911 ntTSL 5 BASIC12.3□□□□□ -0.44
VPS13CQ709C8 MIR648-201ENST00000385046 94 ntBASIC12.3□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 79.7 ms