Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 AGER-214ENST00000538695 487 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 KRT90P-201ENST00000549264 1064 ntBASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 CMC2-214ENST00000565925 640 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 GNRHR2-203ENST00000581100 1187 ntBASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 RHOXF1P1-202ENST00000635473 501 ntBASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CCDC144BQ3MJ40 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 ACKR1-201ENST00000368121 1240 ntBASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 AC022137.2-201ENST00000503482 481 ntBASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 IFT20-206ENST00000578122 834 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 IFT20-208ENST00000578985 831 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 AC244093.1-201ENST00000610837 814 ntBASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 AC009542.2-202ENST00000619004 1067 ntBASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 AC099795.1-202ENST00000640492 759 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 FGD5P1-202ENST00000614866 2498 ntBASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC144BQ3MJ40 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 RPL13AP20-201ENST00000459725 609 ntBASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 RPL8-205ENST00000527914 551 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 AC093813.1-201ENST00000605066 256 ntBASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CCDC144BQ3MJ40 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 65.1 ms