Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
UBA52P62987 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
UBA52P62987 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
UBA52P62987 AL359881.3-201ENST00000602640 1721 ntBASIC13.25□□□□□ -0.29
UBA52P62987 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
UBA52P62987 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC13.24□□□□□ -0.29
UBA52P62987 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 TCAF1P1-201ENST00000414990 2232 ntBASIC13.24□□□□□ -0.29
UBA52P62987 RBFADN-204ENST00000568911 5187 ntTSL 2 BASIC13.24□□□□□ -0.29
UBA52P62987 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
UBA52P62987 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 SEPT9-220ENST00000588690 2919 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 AL035456.1-201ENST00000456064 1369 ntBASIC13.24□□□□□ -0.29
UBA52P62987 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 XRCC3-211ENST00000555055 2584 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 TKT-201ENST00000296289 1931 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 CFAP52-202ENST00000396219 1912 ntTSL 2 BASIC13.24□□□□□ -0.29
UBA52P62987 BX640514.1-201ENST00000583223 1918 ntBASIC13.24□□□□□ -0.29
UBA52P62987 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC13.24□□□□□ -0.29
UBA52P62987 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC13.24□□□□□ -0.29
UBA52P62987 AL353705.2-201ENST00000428243 662 ntBASIC13.24□□□□□ -0.29
UBA52P62987 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.24□□□□□ -0.29
UBA52P62987 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.24□□□□□ -0.29
UBA52P62987 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 SRP9-204ENST00000619790 377 ntTSL 2 BASIC13.24□□□□□ -0.29
UBA52P62987 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 PHF24-201ENST00000242315 5718 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 LPAR5-201ENST00000329858 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 PCM1-201ENST00000325083 6820 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 DUSP27-201ENST00000271385 3597 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 MSL2-201ENST00000309993 4692 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 PRR34-201ENST00000396008 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC13.24□□□□□ -0.29
UBA52P62987 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
UBA52P62987 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
UBA52P62987 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC13.23□□□□□ -0.29
UBA52P62987 AC011462.1-202ENST00000540732 1960 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
UBA52P62987 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.23□□□□□ -0.29
UBA52P62987 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC13.23□□□□□ -0.29
UBA52P62987 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 OR10AC1-201ENST00000439431 2898 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
UBA52P62987 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 TRIO-202ENST00000344204 11100 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC13.23□□□□□ -0.29
UBA52P62987 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC13.23□□□□□ -0.29
UBA52P62987 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC13.23□□□□□ -0.29
UBA52P62987 NAA50-208ENST00000497255 789 ntTSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 PRYP6-201ENST00000514804 343 ntBASIC13.23□□□□□ -0.29
UBA52P62987 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC13.23□□□□□ -0.29
UBA52P62987 SSH2-210ENST00000582084 560 ntTSL 3 BASIC13.23□□□□□ -0.29
UBA52P62987 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC13.23□□□□□ -0.29
UBA52P62987 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC13.23□□□□□ -0.29
UBA52P62987 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC13.23□□□□□ -0.29
UBA52P62987 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.23□□□□□ -0.29
UBA52P62987 KDM6B-201ENST00000254846 6713 ntAPPRIS P2 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 RBPJ-206ENST00000361572 1697 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.23□□□□□ -0.29
UBA52P62987 OPRL1-201ENST00000336866 3321 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 C7orf57-203ENST00000430738 2056 ntTSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 CLCN7-201ENST00000262318 3717 ntTSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 ARPC4-TTLL3-201ENST00000397256 2466 ntAPPRIS P1 TSL 5 BASIC13.23□□□□□ -0.29
UBA52P62987 AC244021.1-201ENST00000417218 3662 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
UBA52P62987 FAM13B-201ENST00000033079 5465 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms