Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC14.56□□□□□ -0.08
CLDN6P56747 NPPA-201ENST00000376476 728 ntTSL 3 BASIC14.56□□□□□ -0.08
CLDN6P56747 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC14.56□□□□□ -0.08
CLDN6P56747 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC14.56□□□□□ -0.08
CLDN6P56747 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 AC011742.3-201ENST00000439053 820 ntBASIC14.56□□□□□ -0.08
CLDN6P56747 FGFR3P1-201ENST00000449999 601 ntBASIC14.56□□□□□ -0.08
CLDN6P56747 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 AC004066.1-201ENST00000502488 802 ntBASIC14.56□□□□□ -0.08
CLDN6P56747 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC14.56□□□□□ -0.08
CLDN6P56747 AC013355.1-201ENST00000562625 723 ntBASIC14.56□□□□□ -0.08
CLDN6P56747 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.56□□□□□ -0.08
CLDN6P56747 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 MIR4783-201ENST00000580343 82 ntBASIC14.56□□□□□ -0.08
CLDN6P56747 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.56□□□□□ -0.08
CLDN6P56747 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC14.56□□□□□ -0.08
CLDN6P56747 CLUHP2-201ENST00000426660 1303 ntBASIC14.56□□□□□ -0.08
CLDN6P56747 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC14.56□□□□□ -0.08
CLDN6P56747 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC14.56□□□□□ -0.08
CLDN6P56747 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC14.56□□□□□ -0.08
CLDN6P56747 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC14.56□□□□□ -0.08
CLDN6P56747 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC14.56□□□□□ -0.08
CLDN6P56747 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CLDN6P56747 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC14.56□□□□□ -0.08
CLDN6P56747 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.56□□□□□ -0.08
CLDN6P56747 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14.55□□□□□ -0.08
CLDN6P56747 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC14.55□□□□□ -0.08
CLDN6P56747 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC14.55□□□□□ -0.08
CLDN6P56747 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.55□□□□□ -0.08
CLDN6P56747 REXO1L5P-201ENST00000622260 2098 ntBASIC14.55□□□□□ -0.08
CLDN6P56747 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.55□□□□□ -0.08
CLDN6P56747 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC14.55□□□□□ -0.08
CLDN6P56747 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CLDN6P56747 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.55□□□□□ -0.08
CLDN6P56747 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC14.55□□□□□ -0.08
CLDN6P56747 DUSP13-206ENST00000472493 920 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 IGLV3-15-201ENST00000518356 244 ntBASIC14.55□□□□□ -0.08
CLDN6P56747 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC14.55□□□□□ -0.08
CLDN6P56747 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 MIR4750-201ENST00000584564 56 ntBASIC14.55□□□□□ -0.08
CLDN6P56747 FBXL12-204ENST00000586469 544 ntTSL 2 BASIC14.55□□□□□ -0.08
CLDN6P56747 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 AC007950.2-201ENST00000615045 2347 ntBASIC14.55□□□□□ -0.08
CLDN6P56747 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 AC004899.1-201ENST00000424687 1714 ntBASIC14.55□□□□□ -0.08
CLDN6P56747 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC14.55□□□□□ -0.08
CLDN6P56747 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC14.55□□□□□ -0.08
CLDN6P56747 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC14.55□□□□□ -0.08
CLDN6P56747 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.55□□□□□ -0.08
CLDN6P56747 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC14.55□□□□□ -0.08
CLDN6P56747 SLC38A5-213ENST00000620913 1993 ntAPPRIS P1 TSL 5 BASIC14.54□□□□□ -0.08
CLDN6P56747 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC14.54□□□□□ -0.08
CLDN6P56747 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.54□□□□□ -0.08
CLDN6P56747 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CLDN6P56747 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLDN6P56747 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.54□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms