Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 TREHP1-201ENST00000531328 465 ntBASIC17.42■□□□□ 0.38
SCN4AP35499 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC17.42■□□□□ 0.38
SCN4AP35499 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 AC013553.1-201ENST00000560906 267 ntBASIC17.42■□□□□ 0.38
SCN4AP35499 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC17.42■□□□□ 0.38
SCN4AP35499 TPM4-202ENST00000344824 1417 ntAPPRIS P1 TSL 5 BASIC17.42■□□□□ 0.38
SCN4AP35499 CD74-202ENST00000353334 1449 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
SCN4AP35499 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC17.41■□□□□ 0.38
SCN4AP35499 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 AL513523.2-202ENST00000427283 2040 ntBASIC17.41■□□□□ 0.38
SCN4AP35499 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 TUBA3C-202ENST00000618094 1386 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.41■□□□□ 0.38
SCN4AP35499 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 COX8A-201ENST00000314133 507 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 CHCHD2P2-201ENST00000503744 321 ntBASIC17.41■□□□□ 0.38
SCN4AP35499 AC092862.1-201ENST00000541534 533 ntBASIC17.41■□□□□ 0.38
SCN4AP35499 NACA-221ENST00000552540 1074 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 ELP5-212ENST00000574255 671 ntTSL 2 BASIC17.41■□□□□ 0.38
SCN4AP35499 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC17.41■□□□□ 0.38
SCN4AP35499 MVK-217ENST00000639206 367 ntTSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 KRT8P28-201ENST00000433288 1390 ntBASIC17.41■□□□□ 0.38
SCN4AP35499 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.41■□□□□ 0.38
SCN4AP35499 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
SCN4AP35499 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.41■□□□□ 0.38
SCN4AP35499 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
SCN4AP35499 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SCN4AP35499 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC17.4■□□□□ 0.38
SCN4AP35499 CSAG1-204ENST00000452779 627 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC17.4■□□□□ 0.38
SCN4AP35499 AC136601.1-201ENST00000521803 666 ntTSL 3 BASIC17.4■□□□□ 0.38
SCN4AP35499 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC17.4■□□□□ 0.38
SCN4AP35499 GSTZ1-210ENST00000554279 795 ntTSL 2 BASIC17.4■□□□□ 0.38
SCN4AP35499 AC008972.2-201ENST00000606587 494 ntBASIC17.4■□□□□ 0.38
SCN4AP35499 CCDC113-206ENST00000616795 891 ntTSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 CICP11-201ENST00000434745 2827 ntBASIC17.4■□□□□ 0.38
SCN4AP35499 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 MED7-202ENST00000420343 1382 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
SCN4AP35499 LILRP1-201ENST00000444199 1370 ntBASIC17.4■□□□□ 0.38
SCN4AP35499 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
SCN4AP35499 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC17.4■□□□□ 0.38
SCN4AP35499 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
SCN4AP35499 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 AC092127.1-201ENST00000567093 3455 ntBASIC17.4■□□□□ 0.38
SCN4AP35499 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
SCN4AP35499 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 OTOS-201ENST00000319460 566 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 AC106827.1-201ENST00000366454 431 ntBASIC17.4■□□□□ 0.38
SCN4AP35499 ID2-AS1-201ENST00000412712 953 ntTSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC17.4■□□□□ 0.38
SCN4AP35499 CD164-210ENST00000512821 964 ntTSL 2 BASIC17.4■□□□□ 0.38
SCN4AP35499 IGHV1-12-201ENST00000518307 205 ntBASIC17.4■□□□□ 0.38
SCN4AP35499 AC008735.2-201ENST00000589456 549 ntTSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 HELLS-212ENST00000630929 400 ntTSL 5 BASIC17.4■□□□□ 0.38
SCN4AP35499 PHB-210ENST00000511832 1509 ntTSL 2 BASIC17.39■□□□□ 0.38
SCN4AP35499 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.38
SCN4AP35499 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
SCN4AP35499 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 AC013726.1-201ENST00000563747 2285 ntBASIC17.39■□□□□ 0.37
SCN4AP35499 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC17.39■□□□□ 0.37
SCN4AP35499 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.39■□□□□ 0.37
SCN4AP35499 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC17.39■□□□□ 0.37
SCN4AP35499 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
SCN4AP35499 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
SCN4AP35499 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC17.39■□□□□ 0.37
SCN4AP35499 AC092580.1-201ENST00000433998 658 ntBASIC17.39■□□□□ 0.37
SCN4AP35499 GDNF-207ENST00000515058 764 ntTSL 5 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms