Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
COL5A1P20908 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 CACFD1-202ENST00000316948 2794 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 AGK-211ENST00000629555 2765 ntTSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 AHCYP4-201ENST00000419201 1315 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 COPS7B-205ENST00000409295 1009 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 AL672291.1-201ENST00000417047 462 ntTSL 3 BASIC14.24□□□□□ -0.13
COL5A1P20908 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 HPGD-203ENST00000422112 805 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 AC026320.2-201ENST00000434379 478 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 AL035414.1-201ENST00000451327 857 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 RN7SL818P-201ENST00000485099 259 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC14.24□□□□□ -0.13
COL5A1P20908 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 NPLOC4-209ENST00000572760 946 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 RN7SL725P-201ENST00000606439 259 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 AL022334.2-201ENST00000610000 484 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 MIR6842-201ENST00000612539 65 ntBASIC14.24□□□□□ -0.13
COL5A1P20908 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.24□□□□□ -0.13
COL5A1P20908 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.24□□□□□ -0.13
COL5A1P20908 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
COL5A1P20908 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC14.23□□□□□ -0.13
COL5A1P20908 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC14.23□□□□□ -0.13
COL5A1P20908 PRAL-201ENST00000624952 3286 ntBASIC14.23□□□□□ -0.13
COL5A1P20908 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.23□□□□□ -0.13
COL5A1P20908 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC14.23□□□□□ -0.13
COL5A1P20908 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC14.23□□□□□ -0.13
COL5A1P20908 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC14.23□□□□□ -0.13
COL5A1P20908 AC097065.1-201ENST00000425737 517 ntBASIC14.23□□□□□ -0.13
COL5A1P20908 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.23□□□□□ -0.13
COL5A1P20908 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC14.23□□□□□ -0.13
COL5A1P20908 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC14.23□□□□□ -0.13
COL5A1P20908 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.23□□□□□ -0.13
COL5A1P20908 AP000845.1-201ENST00000581677 2131 ntBASIC14.23□□□□□ -0.13
COL5A1P20908 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC14.23□□□□□ -0.13
COL5A1P20908 MIR4522-201ENST00000584932 87 ntBASIC14.23□□□□□ -0.13
COL5A1P20908 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
COL5A1P20908 AC025262.2-201ENST00000623975 1056 ntBASIC14.23□□□□□ -0.13
COL5A1P20908 AC092299.1-201ENST00000632679 757 ntBASIC14.23□□□□□ -0.13
COL5A1P20908 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
COL5A1P20908 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC14.23□□□□□ -0.13
COL5A1P20908 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
COL5A1P20908 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC14.23□□□□□ -0.13
COL5A1P20908 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC14.23□□□□□ -0.13
COL5A1P20908 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
COL5A1P20908 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.23□□□□□ -0.13
COL5A1P20908 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC14.22□□□□□ -0.13
COL5A1P20908 RPL8P2-201ENST00000430538 502 ntBASIC14.22□□□□□ -0.13
COL5A1P20908 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC14.22□□□□□ -0.13
COL5A1P20908 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC14.22□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms