Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
SPTA1P02549 ADAMTSL1-210ENST00000431052 824 ntTSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC13.73□□□□□ -0.21
SPTA1P02549 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC13.73□□□□□ -0.21
SPTA1P02549 AC106820.3-201ENST00000561653 397 ntBASIC13.73□□□□□ -0.21
SPTA1P02549 AC103988.2-201ENST00000561804 725 ntBASIC13.73□□□□□ -0.21
SPTA1P02549 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 MME-218ENST00000625667 363 ntTSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 AC131212.3-201ENST00000624087 4219 ntBASIC13.73□□□□□ -0.21
SPTA1P02549 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 DBET-201ENST00000630918 3363 ntBASIC13.73□□□□□ -0.21
SPTA1P02549 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 MVK-214ENST00000629016 1591 ntTSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC13.73□□□□□ -0.21
SPTA1P02549 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC13.73□□□□□ -0.21
SPTA1P02549 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC13.73□□□□□ -0.21
SPTA1P02549 KRT8P29-201ENST00000420409 1371 ntBASIC13.72□□□□□ -0.21
SPTA1P02549 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SPTA1P02549 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SPTA1P02549 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
SPTA1P02549 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 FKBP1B-205ENST00000452109 953 ntTSL 3 BASIC13.72□□□□□ -0.21
SPTA1P02549 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 AC051619.9-201ENST00000623237 597 ntBASIC13.72□□□□□ -0.21
SPTA1P02549 AL138720.1-201ENST00000629853 778 ntTSL 5 BASIC13.72□□□□□ -0.21
SPTA1P02549 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC13.72□□□□□ -0.21
SPTA1P02549 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 ALOX12P2-203ENST00000570921 1945 ntBASIC13.72□□□□□ -0.21
SPTA1P02549 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC13.72□□□□□ -0.21
SPTA1P02549 NAIF1-201ENST00000373078 3399 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 ABCG2-201ENST00000237612 4479 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 STYXL1-201ENST00000248600 1415 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC13.72□□□□□ -0.21
SPTA1P02549 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 CRYBB1-201ENST00000215939 1102 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 CNRIP1-202ENST00000409559 644 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC13.72□□□□□ -0.21
SPTA1P02549 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC13.72□□□□□ -0.21
SPTA1P02549 CHMP1AP1-201ENST00000445563 662 ntBASIC13.72□□□□□ -0.21
SPTA1P02549 LTBR-209ENST00000541102 1084 ntTSL 5 BASIC13.72□□□□□ -0.21
SPTA1P02549 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC13.72□□□□□ -0.21
SPTA1P02549 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC13.72□□□□□ -0.21
SPTA1P02549 AL603764.1-201ENST00000636452 321 ntBASIC13.72□□□□□ -0.21
SPTA1P02549 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 JPH1-201ENST00000342232 4378 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC13.72□□□□□ -0.21
SPTA1P02549 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC13.72□□□□□ -0.21
SPTA1P02549 ADAMTS1-201ENST00000284984 5191 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
SPTA1P02549 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC13.72□□□□□ -0.21
SPTA1P02549 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC13.71□□□□□ -0.21
SPTA1P02549 SIGLEC6-205ENST00000425629 1852 ntAPPRIS P4 TSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.21
SPTA1P02549 SCGN-203ENST00000612225 1402 ntTSL 5 BASIC13.71□□□□□ -0.21
SPTA1P02549 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
SPTA1P02549 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC13.71□□□□□ -0.21
SPTA1P02549 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 MIR4522-201ENST00000584932 87 ntBASIC13.71□□□□□ -0.21
SPTA1P02549 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.71□□□□□ -0.21
SPTA1P02549 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC13.71□□□□□ -0.21
SPTA1P02549 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.71□□□□□ -0.21
SPTA1P02549 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
SPTA1P02549 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
SPTA1P02549 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms