Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.91
NPHP4O75161 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP4O75161 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
NPHP4O75161 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.91
NPHP4O75161 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.91
NPHP4O75161 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
NPHP4O75161 AC011287.1-201ENST00000639998 1349 ntTSL 5 BASIC20.77■□□□□ 0.91
NPHP4O75161 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
NPHP4O75161 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.77■□□□□ 0.91
NPHP4O75161 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 PRDM8-203ENST00000504452 3706 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NPHP4O75161 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
NPHP4O75161 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
NPHP4O75161 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
NPHP4O75161 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 AC006372.4-201ENST00000624122 1543 ntBASIC20.76■□□□□ 0.91
NPHP4O75161 AL136172.1-201ENST00000598590 1394 ntBASIC20.76■□□□□ 0.91
NPHP4O75161 SLC50A1-203ENST00000368404 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 APTX-211ENST00000463596 1345 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC20.76■□□□□ 0.91
NPHP4O75161 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC20.76■□□□□ 0.91
NPHP4O75161 OR51A9P-201ENST00000422578 911 ntBASIC20.76■□□□□ 0.91
NPHP4O75161 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 AC112487.1-201ENST00000498032 1097 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 LINC02171-201ENST00000508619 1033 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 AC010186.1-201ENST00000546259 532 ntTSL 2 BASIC20.76■□□□□ 0.91
NPHP4O75161 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC20.76■□□□□ 0.91
NPHP4O75161 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
NPHP4O75161 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
NPHP4O75161 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
NPHP4O75161 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.75■□□□□ 0.91
NPHP4O75161 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
NPHP4O75161 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP4O75161 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC20.75■□□□□ 0.91
NPHP4O75161 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP4O75161 XKR9-203ENST00000520030 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 AC022211.2-201ENST00000585075 2527 ntBASIC20.75■□□□□ 0.91
NPHP4O75161 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC20.75■□□□□ 0.91
NPHP4O75161 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP4O75161 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP4O75161 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP4O75161 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC20.75■□□□□ 0.91
NPHP4O75161 ANAPC15-204ENST00000535234 848 ntAPPRIS P3 TSL 2 BASIC20.75■□□□□ 0.91
NPHP4O75161 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC20.75■□□□□ 0.91
NPHP4O75161 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 AC023090.2-201ENST00000625182 2110 ntBASIC20.75■□□□□ 0.91
NPHP4O75161 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC20.75■□□□□ 0.91
NPHP4O75161 MVK-217ENST00000639206 367 ntTSL 5 BASIC20.75■□□□□ 0.91
NPHP4O75161 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 SLC35G3-201ENST00000297307 2004 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
NPHP4O75161 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.75■□□□□ 0.91
NPHP4O75161 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC20.75■□□□□ 0.91
NPHP4O75161 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.75■□□□□ 0.91
NPHP4O75161 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
NPHP4O75161 PHB-210ENST00000511832 1509 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP4O75161 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP4O75161 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC20.74■□□□□ 0.91
NPHP4O75161 FP565260.6-203ENST00000620015 1435 ntTSL 3 BASIC20.74■□□□□ 0.91
NPHP4O75161 LILRP1-201ENST00000444199 1370 ntBASIC20.74■□□□□ 0.91
NPHP4O75161 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NPHP4O75161 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
NPHP4O75161 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
NPHP4O75161 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP4O75161 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC20.74■□□□□ 0.91
NPHP4O75161 RNA5SP406-201ENST00000516106 112 ntBASIC20.74■□□□□ 0.91
NPHP4O75161 AC004686.1-201ENST00000605113 538 ntBASIC20.74■□□□□ 0.91
NPHP4O75161 AL592295.3-201ENST00000637155 863 ntTSL 5 BASIC20.74■□□□□ 0.91
NPHP4O75161 IQSEC2-207ENST00000638583 722 ntTSL 5 BASIC20.74■□□□□ 0.91
NPHP4O75161 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP4O75161 AC099398.1-201ENST00000567919 2776 ntBASIC20.74■□□□□ 0.91
NPHP4O75161 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
NPHP4O75161 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP4O75161 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.74■□□□□ 0.91
NPHP4O75161 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP4O75161 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NPHP4O75161 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms