Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.33□□□□□ -0.12
LDB3O75112 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.33□□□□□ -0.12
LDB3O75112 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC14.33□□□□□ -0.12
LDB3O75112 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC14.33□□□□□ -0.12
LDB3O75112 PRSS30P-206ENST00000641773 873 ntBASIC14.33□□□□□ -0.12
LDB3O75112 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 AC134312.5-201ENST00000568031 1313 ntBASIC14.33□□□□□ -0.12
LDB3O75112 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC14.33□□□□□ -0.12
LDB3O75112 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 AL137783.1-201ENST00000623494 1896 ntBASIC14.33□□□□□ -0.12
LDB3O75112 LINC02228-204ENST00000642115 2962 ntBASIC14.33□□□□□ -0.12
LDB3O75112 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC14.33□□□□□ -0.12
LDB3O75112 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 GOLGA7B-201ENST00000370602 6447 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
LDB3O75112 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
LDB3O75112 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC14.32□□□□□ -0.12
LDB3O75112 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC14.32□□□□□ -0.12
LDB3O75112 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 UBXN2B-201ENST00000399598 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
LDB3O75112 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 FGF6-201ENST00000228837 743 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
LDB3O75112 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC14.32□□□□□ -0.12
LDB3O75112 BAATP1-201ENST00000412284 1225 ntBASIC14.32□□□□□ -0.12
LDB3O75112 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.32□□□□□ -0.12
LDB3O75112 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.32□□□□□ -0.12
LDB3O75112 AC114812.1-204ENST00000449669 728 ntBASIC14.32□□□□□ -0.12
LDB3O75112 GIMAP3P-201ENST00000495150 836 ntBASIC14.32□□□□□ -0.12
LDB3O75112 KRT18P25-201ENST00000508931 1278 ntBASIC14.32□□□□□ -0.12
LDB3O75112 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
LDB3O75112 AC068587.3-201ENST00000526613 355 ntBASIC14.32□□□□□ -0.12
LDB3O75112 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC14.32□□□□□ -0.12
LDB3O75112 AC008735.3-201ENST00000596646 500 ntBASIC14.32□□□□□ -0.12
LDB3O75112 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC14.32□□□□□ -0.12
LDB3O75112 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
LDB3O75112 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 CBLN4-201ENST00000064571 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 LILRP1-201ENST00000444199 1370 ntBASIC14.32□□□□□ -0.12
LDB3O75112 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 MIR600HG-201ENST00000449175 5984 ntBASIC14.32□□□□□ -0.12
LDB3O75112 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
LDB3O75112 KRT8P14-201ENST00000414254 1442 ntBASIC14.32□□□□□ -0.12
LDB3O75112 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.32□□□□□ -0.12
LDB3O75112 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
LDB3O75112 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 NEBL-203ENST00000417816 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 LRRC59-203ENST00000576448 1531 ntBASIC14.31□□□□□ -0.12
LDB3O75112 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
LDB3O75112 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
LDB3O75112 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
LDB3O75112 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 64.7 ms