Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 ZNF226-211ENST00000588742 447 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AC004461.2-201ENST00000629517 803 ntBASIC12.36□□□□□ -0.43
FOXA2Q9Y261 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 ARMCX4-202ENST00000423738 7424 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA2Q9Y261 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 MRPS18AP1-201ENST00000414458 589 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 TOMM22P5-201ENST00000416399 439 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 AC104794.3-201ENST00000566840 1248 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 AC092337.1-201ENST00000568699 1129 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 LINC01115-203ENST00000606068 577 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 AL121723.1-201ENST00000445194 1519 ntBASIC12.35□□□□□ -0.43
FOXA2Q9Y261 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC12.35□□□□□ -0.43
FOXA2Q9Y261 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA2Q9Y261 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA2Q9Y261 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA2Q9Y261 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA2Q9Y261 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
FOXA2Q9Y261 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA2Q9Y261 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.34□□□□□ -0.43
FOXA2Q9Y261 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 50.2 ms