Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 ACTG1P2-201ENST00000415776 1125 ntBASIC16.87■□□□□ 0.29
VTA1Q9NP79 TLE1P1-201ENST00000422965 589 ntBASIC16.87■□□□□ 0.29
VTA1Q9NP79 ACTG1P11-201ENST00000425411 1125 ntBASIC16.87■□□□□ 0.29
VTA1Q9NP79 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 IGHV4-4-201ENST00000455737 417 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 RPL18P13-201ENST00000478088 569 ntBASIC16.87■□□□□ 0.29
VTA1Q9NP79 AC125604.1-201ENST00000496255 707 ntBASIC16.87■□□□□ 0.29
VTA1Q9NP79 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 ZNF419-208ENST00000518999 746 ntTSL 3 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 PIGH-209ENST00000559581 1049 ntTSL 4 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 STRN-202ENST00000379213 2254 ntTSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 AC006058.4-201ENST00000624016 1670 ntBASIC16.86■□□□□ 0.29
VTA1Q9NP79 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 HHIP-AS1-201ENST00000503066 897 ntTSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 RN7SL574P-201ENST00000581512 297 ntBASIC16.86■□□□□ 0.29
VTA1Q9NP79 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 AP000346.4-201ENST00000614827 381 ntBASIC16.86■□□□□ 0.29
VTA1Q9NP79 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.86■□□□□ 0.29
VTA1Q9NP79 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
VTA1Q9NP79 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
VTA1Q9NP79 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 TAMM41-205ENST00000444133 1619 ntTSL 2 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 AC087481.3-201ENST00000602886 1894 ntBASIC16.85■□□□□ 0.29
VTA1Q9NP79 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 WASHC3-201ENST00000240079 916 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
VTA1Q9NP79 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 HLA-DQB2-229ENST00000411527 1059 ntBASIC16.85■□□□□ 0.29
VTA1Q9NP79 AC012441.2-201ENST00000444843 739 ntBASIC16.85■□□□□ 0.29
VTA1Q9NP79 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 NUP210P1-202ENST00000504322 710 ntBASIC16.85■□□□□ 0.29
VTA1Q9NP79 ALG3P1-201ENST00000508806 1114 ntBASIC16.85■□□□□ 0.29
VTA1Q9NP79 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC16.85■□□□□ 0.29
VTA1Q9NP79 FGFR3P5-201ENST00000564496 886 ntBASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms