Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 AC011455.3-201ENST00000599996 1967 ntAPPRIS P1 TSL 2 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 VILL-202ENST00000383759 2787 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC18.22■□□□□ 0.51
UPF3BQ9BZI7 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 MRPS18AP1-201ENST00000414458 589 ntBASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 AC007274.1-201ENST00000439805 662 ntBASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 TMPRSS11CP-201ENST00000453277 683 ntBASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 GAPDHP40-201ENST00000505218 1006 ntBASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 SRSF5-203ENST00000553521 2815 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.21■□□□□ 0.51
UPF3BQ9BZI7 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
UPF3BQ9BZI7 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.5
UPF3BQ9BZI7 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.5
UPF3BQ9BZI7 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC18.21■□□□□ 0.5
UPF3BQ9BZI7 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 UBA1-201ENST00000335972 3559 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 LILRP1-201ENST00000444199 1370 ntBASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AC236430.1-201ENST00000402231 743 ntBASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AC002472.2-201ENST00000442739 958 ntBASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 TSPY16P-201ENST00000449843 468 ntBASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 PTPRG-AS1-205ENST00000475371 733 ntTSL 3 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AL358472.5-202ENST00000641448 1267 ntBASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 IL6R-201ENST00000344086 3217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC18.2■□□□□ 0.5
UPF3BQ9BZI7 CACTIN-203ENST00000429344 3612 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 AC018442.1-201ENST00000421439 2061 ntBASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 PIGT-202ENST00000279036 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.19■□□□□ 0.5
UPF3BQ9BZI7 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms