Protein–RNA interactions for Protein: Q96RI1

NR1H4, Bile acid receptor, humanhuman

Predicted RBP Predictions only

Length 486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NR1H4Q96RI1 MAN2C1-216ENST00000563622 2961 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
NR1H4Q96RI1 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
NR1H4Q96RI1 ZFP36L2-201ENST00000282388 3696 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
NR1H4Q96RI1 ZNF717-204ENST00000478296 3875 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
NR1H4Q96RI1 MFAP4-202ENST00000395592 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
NR1H4Q96RI1 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.41□□□□□ -0.1
NR1H4Q96RI1 AP005117.1-201ENST00000584346 1413 ntBASIC14.41□□□□□ -0.1
NR1H4Q96RI1 DDX31-202ENST00000372153 3285 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 TICAM1-201ENST00000248244 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 AGAP5-201ENST00000374094 2394 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 FAM90A12P-201ENST00000519497 2375 ntBASIC14.4□□□□□ -0.1
NR1H4Q96RI1 FAM90A24P-201ENST00000520792 2369 ntBASIC14.4□□□□□ -0.1
NR1H4Q96RI1 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 POMT1-201ENST00000341012 2912 ntTSL 2 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 CREB3L4-204ENST00000368603 1557 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 TMEM170A-207ENST00000569540 2331 ntTSL 2 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 THAP2-201ENST00000308086 5719 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 DSE-201ENST00000331677 7237 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 INSL3-202ENST00000379695 899 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 NCBP2-AS1-201ENST00000447775 562 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 AP001269.4-201ENST00000609611 512 ntBASIC14.4□□□□□ -0.1
NR1H4Q96RI1 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 SLC4A7-203ENST00000425128 7970 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 CETP-203ENST00000566128 1733 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 GDPGP1-202ENST00000558017 5323 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 LINC00863-201ENST00000439559 3287 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 NEDD4L-238ENST00000635997 4402 ntTSL 5 BASIC14.4□□□□□ -0.1
NR1H4Q96RI1 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 CAP1-203ENST00000372797 3105 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 ATG13-215ENST00000529655 2566 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 MAGED4B-211ENST00000497164 2482 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 DOCK4-206ENST00000437633 6212 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 MKNK1-204ENST00000371946 2719 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 TTC14-202ENST00000382584 2274 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 DNM3-202ENST00000367731 7613 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 VASH2-202ENST00000366964 2960 ntTSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 RAB40A-202ENST00000372633 3126 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 STX10-201ENST00000242770 1099 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 AC243562.2-201ENST00000561247 970 ntBASIC14.39□□□□□ -0.11
NR1H4Q96RI1 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 AC020934.1-201ENST00000588469 739 ntTSL 3 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 AC064862.7-201ENST00000604520 867 ntBASIC14.39□□□□□ -0.11
NR1H4Q96RI1 AL139424.1-201ENST00000607572 797 ntBASIC14.39□□□□□ -0.11
NR1H4Q96RI1 AL732292.2-201ENST00000609649 430 ntBASIC14.39□□□□□ -0.11
NR1H4Q96RI1 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 NCOR2-208ENST00000429285 8475 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 TCAM1P-207ENST00000485295 1537 ntBASIC14.39□□□□□ -0.11
NR1H4Q96RI1 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 UACA-201ENST00000322954 6939 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 PDK2-203ENST00000503176 3440 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
NR1H4Q96RI1 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.5 ms