Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 PTPN20CP-201ENST00000614090 920 ntBASIC16.39■□□□□ 0.21
LRCH3Q96II8 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.39■□□□□ 0.21
LRCH3Q96II8 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC16.39■□□□□ 0.21
LRCH3Q96II8 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 PRPF18-202ENST00000378572 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
LRCH3Q96II8 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 LRFN2-201ENST00000338305 3270 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 RPS9-204ENST00000391753 709 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AL592076.1-201ENST00000424448 303 ntBASIC16.38■□□□□ 0.21
LRCH3Q96II8 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AC245100.5-201ENST00000452108 331 ntBASIC16.38■□□□□ 0.21
LRCH3Q96II8 RN7SL258P-201ENST00000478664 300 ntBASIC16.38■□□□□ 0.21
LRCH3Q96II8 AP003068.3-201ENST00000527789 175 ntTSL 2 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 DDX5-235ENST00000630471 473 ntTSL 4 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 AC092299.1-201ENST00000632679 757 ntBASIC16.38■□□□□ 0.21
LRCH3Q96II8 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 HYMAI-201ENST00000635591 3347 ntBASIC16.38■□□□□ 0.21
LRCH3Q96II8 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC16.38■□□□□ 0.21
LRCH3Q96II8 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
LRCH3Q96II8 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 BAK1P1-201ENST00000317045 636 ntBASIC16.37■□□□□ 0.21
LRCH3Q96II8 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 AC004522.1-201ENST00000419978 654 ntBASIC16.37■□□□□ 0.21
LRCH3Q96II8 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 AC100827.2-201ENST00000563214 1194 ntBASIC16.37■□□□□ 0.21
LRCH3Q96II8 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 AL627230.2-201ENST00000613254 655 ntBASIC16.37■□□□□ 0.21
LRCH3Q96II8 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC16.37■□□□□ 0.21
LRCH3Q96II8 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
LRCH3Q96II8 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC16.36■□□□□ 0.21
LRCH3Q96II8 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRCH3Q96II8 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRCH3Q96II8 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
LRCH3Q96II8 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.36■□□□□ 0.21
LRCH3Q96II8 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.36■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 44.8 ms