Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 SFXN3-201ENST00000224807 3089 ntTSL 5 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 CR383656.2-201ENST00000548656 2254 ntBASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLIP4Q8N3C7 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 FO538757.1-201ENST00000623083 1397 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 LINC01230-201ENST00000625222 3017 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 NUP50-201ENST00000347635 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 HLA-V-204ENST00000476601 1289 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 SLED1-202ENST00000512051 380 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 AL512361.1-201ENST00000554200 418 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 TEX28P1-201ENST00000613479 1221 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 TEX28P2-201ENST00000617764 1221 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 UNC13A-202ENST00000519716 9838 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 ALDH3A2-226ENST00000631291 3822 ntTSL 5 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 TUBB3P1-201ENST00000405796 1332 ntBASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 CCNF-202ENST00000397066 4283 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLIP4Q8N3C7 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 AC148477.2-201ENST00000537762 3039 ntTSL 3 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 FGD5P1-202ENST00000614866 2498 ntBASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 MKRN3-201ENST00000314520 2337 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 TGIF2-201ENST00000373872 3406 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 CICP17-201ENST00000418553 2377 ntBASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 LINC01115-203ENST00000606068 577 ntBASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 REXO1L2P-201ENST00000425429 2069 ntBASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 MN1-201ENST00000302326 7556 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 TIE1-201ENST00000372476 3882 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 IMPDH1-201ENST00000338791 2881 ntTSL 2 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 IMPDH1-217ENST00000626419 2862 ntAPPRIS ALT1 TSL 5 BASIC14.36□□□□□ -0.11
CLIP4Q8N3C7 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
CLIP4Q8N3C7 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms