Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MFAP1P1-201ENST00000442257 1255 ntBASIC9.43□□□□□ -0.9
LINC00643Q86TS7 GATS-209ENST00000454084 1030 ntTSL 3 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 B3GAT3P1-201ENST00000471720 806 ntBASIC9.43□□□□□ -0.9
LINC00643Q86TS7 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 AL353708.3-201ENST00000610272 989 ntBASIC9.43□□□□□ -0.9
LINC00643Q86TS7 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 WWOX-218ENST00000627394 894 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 INPP5J-208ENST00000412277 3512 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 FAM160A2-202ENST00000449352 3354 ntAPPRIS ALT1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SMOC2-202ENST00000356284 3117 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 HAUS6-202ENST00000380502 6536 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 ATP7B-202ENST00000344297 5861 ntTSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 TATDN3-201ENST00000366973 2321 ntAPPRIS ALT1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 BCORL1-201ENST00000218147 6860 ntAPPRIS P1 TSL 5 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 MAP2-201ENST00000199940 2241 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 AC060814.4-201ENST00000594169 2163 ntBASIC9.43□□□□□ -0.9
LINC00643Q86TS7 SPAG5-AS1-201ENST00000414744 2143 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 LINC01973-201ENST00000374983 4678 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 HTR3A-201ENST00000299961 1994 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 DDO-201ENST00000368923 1953 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 USP33-203ENST00000370793 4502 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 DSN1-201ENST00000373734 1915 ntTSL 2 BASIC9.43□□□□□ -0.9
LINC00643Q86TS7 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SPINT1-201ENST00000344051 3056 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 DPP9-214ENST00000598800 3098 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 COL11A1-210ENST00000512756 5442 ntAPPRIS ALT1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 NT5DC4-201ENST00000327581 1767 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SLC7A8-205ENST00000453702 1752 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PPHLN1-206ENST00000395580 1693 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 ACTL8-202ENST00000617065 1670 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PCMTD1-208ENST00000544451 3697 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AKNA-201ENST00000223791 4414 ntAPPRIS ALT2 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 INHBE-201ENST00000266646 2429 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PDE2A-201ENST00000334456 4315 ntAPPRIS P3 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AC243591.1-201ENST00000452967 1364 ntBASIC9.42□□□□□ -0.9
LINC00643Q86TS7 POM121L9P-201ENST00000414583 5018 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SSX2IP-201ENST00000342203 5835 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 CCDC144A-204ENST00000360524 5830 ntAPPRIS P2 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AC072061.1-201ENST00000569710 2234 ntBASIC9.42□□□□□ -0.9
LINC00643Q86TS7 CDIP1-201ENST00000399599 3009 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 MDGA1-207ENST00000505425 3021 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 STX7-201ENST00000367937 1090 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 GLRX3-202ENST00000368644 3827 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AC068472.1-201ENST00000474589 881 ntBASIC9.42□□□□□ -0.9
LINC00643Q86TS7 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PHB2-213ENST00000546111 858 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 AC034238.1-212ENST00000596137 723 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 GOLGA8IP-202ENST00000611635 2100 ntBASIC9.42□□□□□ -0.9
LINC00643Q86TS7 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 LRRC8A-201ENST00000259324 4619 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 EPB41L1-206ENST00000373950 3631 ntTSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 PLA2G15-201ENST00000219345 2727 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 CACNA1C-219ENST00000399649 6529 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 ENOX2-204ENST00000394363 4174 ntAPPRIS P1 TSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 CPPED1-201ENST00000261660 1898 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 B4GALT3-202ENST00000367998 1871 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 CPN1-201ENST00000370418 1863 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 REV3L-201ENST00000358835 10815 ntAPPRIS P1 TSL 5 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 MAK16-201ENST00000360128 3991 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 MSH6-210ENST00000540021 3930 ntTSL 2 BASIC9.42□□□□□ -0.9
LINC00643Q86TS7 IKBKE-201ENST00000578328 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC9.42□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms