Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC16.44■□□□□ 0.22
KRT39Q6A163 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.44■□□□□ 0.22
KRT39Q6A163 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
KRT39Q6A163 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 AC025048.6-201ENST00000634326 1161 ntBASIC16.44■□□□□ 0.22
KRT39Q6A163 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.44■□□□□ 0.22
KRT39Q6A163 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 SF1-209ENST00000433274 2317 ntTSL 2 BASIC16.44■□□□□ 0.22
KRT39Q6A163 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
KRT39Q6A163 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 PDP1-203ENST00000517764 2140 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC16.43■□□□□ 0.22
KRT39Q6A163 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
KRT39Q6A163 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 RPS6KL1-201ENST00000354625 5195 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 APOA1-201ENST00000236850 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC16.43■□□□□ 0.22
KRT39Q6A163 APOA1-205ENST00000375329 927 ntTSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.43■□□□□ 0.22
KRT39Q6A163 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC16.43■□□□□ 0.22
KRT39Q6A163 AC093433.1-201ENST00000458048 571 ntBASIC16.43■□□□□ 0.22
KRT39Q6A163 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC16.43■□□□□ 0.22
KRT39Q6A163 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC16.43■□□□□ 0.22
KRT39Q6A163 DUX4L47-201ENST00000566374 394 ntBASIC16.43■□□□□ 0.22
KRT39Q6A163 AC009486.1-201ENST00000569860 813 ntBASIC16.43■□□□□ 0.22
KRT39Q6A163 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.43■□□□□ 0.22
KRT39Q6A163 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC16.43■□□□□ 0.22
KRT39Q6A163 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 ZMYND10-202ENST00000360165 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
KRT39Q6A163 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.43■□□□□ 0.22
KRT39Q6A163 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.43■□□□□ 0.22
KRT39Q6A163 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
KRT39Q6A163 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
KRT39Q6A163 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC16.42■□□□□ 0.22
KRT39Q6A163 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 LRRC6-205ENST00000519595 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 TMEM237-202ENST00000409444 5592 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC16.42■□□□□ 0.22
KRT39Q6A163 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
KRT39Q6A163 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
KRT39Q6A163 ACTBP8-201ENST00000403258 1108 ntBASIC16.42■□□□□ 0.22
KRT39Q6A163 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
KRT39Q6A163 AC022137.2-201ENST00000503482 481 ntBASIC16.42■□□□□ 0.22
KRT39Q6A163 KRT18P25-201ENST00000508931 1278 ntBASIC16.42■□□□□ 0.22
KRT39Q6A163 AC022616.1-201ENST00000518688 554 ntBASIC16.42■□□□□ 0.22
KRT39Q6A163 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.42■□□□□ 0.22
KRT39Q6A163 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC16.42■□□□□ 0.22
KRT39Q6A163 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
KRT39Q6A163 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
KRT39Q6A163 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC16.42■□□□□ 0.22
KRT39Q6A163 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms