Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC114812.1-204ENST00000449669 728 ntBASIC13.09□□□□□ -0.31
ABCA4P78363 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC13.09□□□□□ -0.31
ABCA4P78363 GTF2A2-208ENST00000484743 408 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC13.09□□□□□ -0.31
ABCA4P78363 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 AL451050.2-201ENST00000606967 682 ntBASIC13.09□□□□□ -0.31
ABCA4P78363 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC13.09□□□□□ -0.31
ABCA4P78363 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.09□□□□□ -0.31
ABCA4P78363 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 CICP11-201ENST00000434745 2827 ntBASIC13.09□□□□□ -0.31
ABCA4P78363 TDRD12-202ENST00000444215 3934 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC13.09□□□□□ -0.31
ABCA4P78363 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC13.09□□□□□ -0.31
ABCA4P78363 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC13.09□□□□□ -0.31
ABCA4P78363 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC13.09□□□□□ -0.31
ABCA4P78363 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.09□□□□□ -0.31
ABCA4P78363 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC13.09□□□□□ -0.31
ABCA4P78363 NKG7-204ENST00000595217 816 ntTSL 2 BASIC13.09□□□□□ -0.31
ABCA4P78363 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC13.09□□□□□ -0.31
ABCA4P78363 AC026740.1-201ENST00000607068 791 ntBASIC13.09□□□□□ -0.31
ABCA4P78363 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 AC105250.1-201ENST00000509378 2057 ntBASIC13.09□□□□□ -0.31
ABCA4P78363 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.31
ABCA4P78363 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC13.08□□□□□ -0.31
ABCA4P78363 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.08□□□□□ -0.31
ABCA4P78363 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.31
ABCA4P78363 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.31
ABCA4P78363 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.08□□□□□ -0.32
ABCA4P78363 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
ABCA4P78363 ILF3-AS1-201ENST00000591501 1983 ntBASIC13.08□□□□□ -0.32
ABCA4P78363 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 PRORSD1P-202ENST00000563365 2154 ntBASIC13.08□□□□□ -0.32
ABCA4P78363 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 C9orf24-201ENST00000297623 1151 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 SNX21-203ENST00000372541 771 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 C9orf24-205ENST00000379133 712 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC13.08□□□□□ -0.32
ABCA4P78363 AC069218.1-201ENST00000435269 762 ntBASIC13.08□□□□□ -0.32
ABCA4P78363 COX5BP1-201ENST00000507622 393 ntBASIC13.08□□□□□ -0.32
ABCA4P78363 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC13.08□□□□□ -0.32
ABCA4P78363 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC13.08□□□□□ -0.32
ABCA4P78363 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 ELK4-202ENST00000357992 10239 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC13.08□□□□□ -0.32
ABCA4P78363 ANKRD30BP2-201ENST00000435744 1610 ntBASIC13.08□□□□□ -0.32
ABCA4P78363 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC13.08□□□□□ -0.32
ABCA4P78363 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 SLC9A7P1-202ENST00000556476 2239 ntBASIC13.08□□□□□ -0.32
ABCA4P78363 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC13.08□□□□□ -0.32
ABCA4P78363 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms