Protein–RNA interactions for Protein: O76039

CDKL5, Cyclin-dependent kinase-like 5, humanhuman

Predictions only

Length 1,030 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDKL5O76039 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 AGPAT1-201ENST00000336984 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC17.71■□□□□ 0.43
CDKL5O76039 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CDKL5O76039 AC114812.1-204ENST00000449669 728 ntBASIC17.71■□□□□ 0.43
CDKL5O76039 ELK1P1-201ENST00000485699 580 ntBASIC17.71■□□□□ 0.43
CDKL5O76039 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 AC008494.3-201ENST00000606615 944 ntBASIC17.71■□□□□ 0.43
CDKL5O76039 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC17.71■□□□□ 0.43
CDKL5O76039 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC17.71■□□□□ 0.43
CDKL5O76039 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC17.71■□□□□ 0.43
CDKL5O76039 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CDKL5O76039 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 AC097376.2-205ENST00000610159 5334 ntBASIC17.71■□□□□ 0.43
CDKL5O76039 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 KRT8P14-201ENST00000414254 1442 ntBASIC17.71■□□□□ 0.43
CDKL5O76039 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC17.71■□□□□ 0.43
CDKL5O76039 SEPT8-206ENST00000378706 4168 ntAPPRIS ALT1 TSL 5 BASIC17.71■□□□□ 0.43
CDKL5O76039 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC17.71■□□□□ 0.43
CDKL5O76039 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC17.71■□□□□ 0.43
CDKL5O76039 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDKL5O76039 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDKL5O76039 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC17.71■□□□□ 0.42
CDKL5O76039 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDKL5O76039 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC17.71■□□□□ 0.42
CDKL5O76039 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.42
CDKL5O76039 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 DCTN1-203ENST00000409240 4365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC17.7■□□□□ 0.42
CDKL5O76039 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.7■□□□□ 0.42
CDKL5O76039 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC17.7■□□□□ 0.42
CDKL5O76039 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.7■□□□□ 0.42
CDKL5O76039 NAP1L1-202ENST00000393263 1896 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 AL137783.1-201ENST00000623494 1896 ntBASIC17.7■□□□□ 0.42
CDKL5O76039 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 WDR53-203ENST00000429115 683 ntTSL 2 BASIC17.7■□□□□ 0.42
CDKL5O76039 AL162726.2-201ENST00000438986 1017 ntBASIC17.7■□□□□ 0.42
CDKL5O76039 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC17.7■□□□□ 0.42
CDKL5O76039 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC17.7■□□□□ 0.42
CDKL5O76039 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC17.7■□□□□ 0.42
CDKL5O76039 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.7■□□□□ 0.42
CDKL5O76039 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.7■□□□□ 0.42
CDKL5O76039 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CDKL5O76039 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CDKL5O76039 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC17.7■□□□□ 0.42
CDKL5O76039 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.7■□□□□ 0.42
CDKL5O76039 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC17.7■□□□□ 0.42
CDKL5O76039 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 AL390755.1-201ENST00000623716 2027 ntBASIC17.7■□□□□ 0.42
CDKL5O76039 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CDKL5O76039 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CDKL5O76039 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 SF1-209ENST00000433274 2317 ntTSL 2 BASIC17.7■□□□□ 0.42
CDKL5O76039 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC17.7■□□□□ 0.42
CDKL5O76039 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDKL5O76039 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDKL5O76039 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDKL5O76039 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDKL5O76039 ADPRHL1-201ENST00000356501 1877 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDKL5O76039 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CDKL5O76039 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDKL5O76039 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
CDKL5O76039 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDKL5O76039 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
CDKL5O76039 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms