Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 RN7SL713P-201ENST00000582127 302 ntBASIC19.19■□□□□ 0.66
NPHP1O15259 LGALS9C-215ENST00000584941 1104 ntTSL 5 BASIC19.19■□□□□ 0.66
NPHP1O15259 AP001505.2-201ENST00000616815 443 ntBASIC19.19■□□□□ 0.66
NPHP1O15259 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC19.19■□□□□ 0.66
NPHP1O15259 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
NPHP1O15259 PRSS30P-206ENST00000641773 873 ntBASIC19.19■□□□□ 0.66
NPHP1O15259 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
NPHP1O15259 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
NPHP1O15259 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.19■□□□□ 0.66
NPHP1O15259 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
NPHP1O15259 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.19■□□□□ 0.66
NPHP1O15259 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
NPHP1O15259 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
NPHP1O15259 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
NPHP1O15259 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC19.18■□□□□ 0.66
NPHP1O15259 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
NPHP1O15259 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC19.18■□□□□ 0.66
NPHP1O15259 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 CLRN1-203ENST00000328863 738 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC19.18■□□□□ 0.66
NPHP1O15259 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 AC005740.2-201ENST00000511085 419 ntBASIC19.18■□□□□ 0.66
NPHP1O15259 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.18■□□□□ 0.66
NPHP1O15259 Z84492.1-201ENST00000606589 408 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
NPHP1O15259 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC19.18■□□□□ 0.66
NPHP1O15259 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC19.18■□□□□ 0.66
NPHP1O15259 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 ZACNP1-201ENST00000612259 710 ntBASIC19.18■□□□□ 0.66
NPHP1O15259 LINC01668-201ENST00000635001 513 ntTSL 4 BASIC19.18■□□□□ 0.66
NPHP1O15259 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
NPHP1O15259 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
NPHP1O15259 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC19.18■□□□□ 0.66
NPHP1O15259 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
NPHP1O15259 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC19.18■□□□□ 0.66
NPHP1O15259 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC19.18■□□□□ 0.66
NPHP1O15259 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
NPHP1O15259 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19.18■□□□□ 0.66
NPHP1O15259 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
NPHP1O15259 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
NPHP1O15259 SORCS1-201ENST00000263054 7272 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.17■□□□□ 0.66
NPHP1O15259 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 MPRIPP1-201ENST00000452433 1089 ntBASIC19.17■□□□□ 0.66
NPHP1O15259 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 IMP3P2-201ENST00000489760 475 ntBASIC19.17■□□□□ 0.66
NPHP1O15259 NCK2-206ENST00000522586 490 ntTSL 5 BASIC19.17■□□□□ 0.66
NPHP1O15259 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC19.17■□□□□ 0.66
NPHP1O15259 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 AC091812.3-201ENST00000621362 345 ntBASIC19.17■□□□□ 0.66
NPHP1O15259 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
NPHP1O15259 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
NPHP1O15259 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
NPHP1O15259 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC19.16■□□□□ 0.66
NPHP1O15259 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
NPHP1O15259 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
NPHP1O15259 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC19.16■□□□□ 0.66
NPHP1O15259 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC19.16■□□□□ 0.66
NPHP1O15259 AC016700.1-201ENST00000429424 312 ntBASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms