Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VTA1Q9NP79 AC020910.5-201ENST00000623668 1865 ntBASIC16.9■□□□□ 0.3
VTA1Q9NP79 CD27-201ENST00000266557 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VTA1Q9NP79 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
VTA1Q9NP79 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
VTA1Q9NP79 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VTA1Q9NP79 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VTA1Q9NP79 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
VTA1Q9NP79 AC008132.1-202ENST00000342005 1389 ntBASIC16.89■□□□□ 0.3
VTA1Q9NP79 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
VTA1Q9NP79 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.89■□□□□ 0.3
VTA1Q9NP79 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 E2F3P2-201ENST00000447755 1422 ntBASIC16.89■□□□□ 0.29
VTA1Q9NP79 NFIC-211ENST00000641145 8399 ntBASIC16.89■□□□□ 0.29
VTA1Q9NP79 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 BMS1P17-203ENST00000444357 552 ntTSL 4 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 BMS1P22-203ENST00000609679 552 ntTSL 4 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 AC090164.2-201ENST00000611487 516 ntBASIC16.89■□□□□ 0.29
VTA1Q9NP79 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 CICP6-201ENST00000457191 2729 ntBASIC16.89■□□□□ 0.29
VTA1Q9NP79 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 FSD1L-206ENST00000481272 1804 ntTSL 2 BASIC16.89■□□□□ 0.29
VTA1Q9NP79 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 LILRP1-201ENST00000444199 1370 ntBASIC16.89■□□□□ 0.29
VTA1Q9NP79 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
VTA1Q9NP79 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 SELENOS-201ENST00000398226 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 LINC01118-202ENST00000409912 1023 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 SLC16A6P1-201ENST00000413214 1059 ntBASIC16.88■□□□□ 0.29
VTA1Q9NP79 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 PUDPP3-201ENST00000445368 636 ntBASIC16.88■□□□□ 0.29
VTA1Q9NP79 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 SUPT4H1P2-201ENST00000501248 353 ntBASIC16.88■□□□□ 0.29
VTA1Q9NP79 TMBIM4-205ENST00000535812 766 ntTSL 4 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 TMBIM4-212ENST00000556010 610 ntTSL 5 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 AL161670.2-201ENST00000557650 1227 ntBASIC16.88■□□□□ 0.29
VTA1Q9NP79 ZFR2-208ENST00000592398 532 ntTSL 5 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 AC132192.2-201ENST00000596206 1147 ntBASIC16.88■□□□□ 0.29
VTA1Q9NP79 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC16.88■□□□□ 0.29
VTA1Q9NP79 AL359258.3-201ENST00000622910 2331 ntBASIC16.88■□□□□ 0.29
VTA1Q9NP79 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 AC020658.6-201ENST00000623564 1870 ntBASIC16.88■□□□□ 0.29
VTA1Q9NP79 PDE8B-201ENST00000264917 5956 ntAPPRIS P3 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
VTA1Q9NP79 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 PSMD13-215ENST00000621534 1572 ntTSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
VTA1Q9NP79 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 NCR3-201ENST00000340027 1042 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
VTA1Q9NP79 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms