Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
TM9SF3Q9HD45 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 H2AFV-206ENST00000437072 589 ntTSL 4 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 MTX1P1-201ENST00000440904 838 ntBASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 OARD1-212ENST00000482515 832 ntTSL 2 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 ECM1P1-201ENST00000604092 1279 ntBASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AC005695.3-201ENST00000614522 232 ntBASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AL008638.5-201ENST00000623814 1298 ntBASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 SSR4P1-203ENST00000599569 2260 ntBASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.25■□□□□ 0.03
TM9SF3Q9HD45 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 NUS1P3-201ENST00000423502 862 ntBASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
TM9SF3Q9HD45 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms