Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 AC120045.2-201ENST00000567334 178 ntBASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 BTNL10-201ENST00000595971 695 ntBASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 AL512343.1-201ENST00000605837 169 ntBASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 PFAS-212ENST00000625942 396 ntTSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.84□□□□□ -0.03
CLIP3Q96DZ5 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 FLII-221ENST00000578558 2377 ntTSL 5 BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.03
CLIP3Q96DZ5 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 BUB1B-PAK6-201ENST00000441369 2767 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 NALCN-AS1-201ENST00000457843 2846 ntTSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 MIR1909-201ENST00000411312 80 ntBASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 KIF26B-202ENST00000407071 7287 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.83□□□□□ -0.04
CLIP3Q96DZ5 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ANKLE1-201ENST00000394458 3218 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 IL17RA-204ENST00000612619 8506 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 AGRN-201ENST00000379370 7323 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
CLIP3Q96DZ5 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms