Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 IGHV3-16-201ENST00000390604 425 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AL355994.2-201ENST00000447882 704 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AC099548.2-209ENST00000480264 625 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 TPI1-206ENST00000488464 791 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AC011495.1-201ENST00000498085 584 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 PKD1P5-201ENST00000532415 10291 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 BAATP1-201ENST00000412284 1225 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 TDH-203ENST00000531764 1110 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 AC004466.1-201ENST00000599515 1080 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ABBA01031660.1-201ENST00000635219 756 ntBASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ENAH-203ENST00000366843 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ING5-213ENST00000636051 4199 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
SHROOM3Q8TF72 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 AC055811.4-201ENST00000624039 1754 ntBASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 AC007686.3-201ENST00000619017 3487 ntBASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 MIR1247-201ENST00000408206 136 ntBASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 AL391280.1-201ENST00000506969 1062 ntBASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 KRT18P25-201ENST00000508931 1278 ntBASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 AC018665.1-201ENST00000622927 1362 ntBASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 AC097359.2-201ENST00000604992 2389 ntBASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.48■□□□□ 0.07
SHROOM3Q8TF72 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHROOM3Q8TF72 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms