Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 CNN2P11-201ENST00000429351 262 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 CNN2P2-201ENST00000443536 909 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 CNN2P3-201ENST00000450201 906 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 ZNF890P-202ENST00000530367 1156 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 AC000095.1-201ENST00000603208 874 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 AL136317.3-201ENST00000618497 906 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 AC139749.1-202ENST00000617529 3139 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 SLC25A29-208ENST00000554912 5169 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 ACE3P-201ENST00000423435 1973 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 ZEB1-AS1-208ENST00000607166 2503 ntBASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 TP73-201ENST00000346387 4854 ntTSL 5 BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
CCDC54Q8NEL0 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 ADPRHL1-204ENST00000612156 9759 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 MARK3-205ENST00000429436 3371 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 CICP24-201ENST00000605464 2705 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 YIPF6-204ENST00000462683 6741 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 SPIN3-207ENST00000638386 4461 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AC232323.1-201ENST00000540724 2099 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 REXO1L5P-201ENST00000622260 2098 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 RPL37AP1-201ENST00000412502 279 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 HLA-J-203ENST00000494367 1087 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 LY6E-204ENST00000519546 971 ntTSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AC010327.4-202ENST00000591484 748 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 ADAMTSL1-207ENST00000380566 2321 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AL121723.1-201ENST00000445194 1519 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 SEZ6-201ENST00000317338 4471 ntAPPRIS P4 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 AJ011931.1-201ENST00000618749 2492 ntBASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
CCDC54Q8NEL0 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 GRM7-203ENST00000389336 2901 ntAPPRIS ALT1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 EPHA5-202ENST00000354839 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 CICP11-201ENST00000434745 2827 ntBASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 SEMA6D-208ENST00000558014 6028 ntTSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC13.36□□□□□ -0.27
CCDC54Q8NEL0 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 63.2 ms