Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 DLEU2-201ENST00000235290 1739 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 NPPC-202ENST00000409852 1051 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 LYPLA2P1-203ENST00000447689 696 ntBASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 AC107464.3-201ENST00000609172 737 ntBASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 AC087392.5-201ENST00000612517 489 ntBASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 AC009560.1-201ENST00000620208 434 ntBASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 SCP2-217ENST00000640998 1101 ntTSL 5 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 SERHL-201ENST00000359906 1346 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
KRT28Q7Z3Y7 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 ABR-203ENST00000536794 2213 ntTSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 PPA2-204ENST00000354147 667 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 PPA2-205ENST00000432483 859 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 XBP1P1-201ENST00000436573 652 ntBASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 AC010234.1-201ENST00000494599 870 ntBASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 AC073911.3-201ENST00000624401 631 ntBASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 AC005618.3-201ENST00000624928 458 ntBASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 AC092299.1-201ENST00000632679 757 ntBASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
KRT28Q7Z3Y7 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 API5-202ENST00000420461 2009 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 AL512330.1-201ENST00000456701 349 ntTSL 3 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 TNNT2-214ENST00000458432 1182 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 AC011773.1-201ENST00000520129 468 ntTSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 AP003398.1-201ENST00000531124 318 ntBASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 AC105137.3-201ENST00000617588 984 ntBASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 TMEM40-204ENST00000435218 1547 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 OR6D1P-203ENST00000641209 4860 ntBASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 LINC00665-205ENST00000585356 1557 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC20.21■□□□□ 0.83
KRT28Q7Z3Y7 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 CAPN3-207ENST00000397200 1643 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
KRT28Q7Z3Y7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms