Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.67■□□□□ 0.74
USP54Q70EL1 CCND3-201ENST00000372987 2233 ntTSL 2 BASIC19.67■□□□□ 0.74
USP54Q70EL1 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
USP54Q70EL1 POLR1E-202ENST00000377798 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USP54Q70EL1 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USP54Q70EL1 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
USP54Q70EL1 RN7SL277P-201ENST00000481521 288 ntBASIC19.66■□□□□ 0.74
USP54Q70EL1 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC19.66■□□□□ 0.74
USP54Q70EL1 CELP-203ENST00000624767 2414 ntTSL 5 BASIC19.66■□□□□ 0.74
USP54Q70EL1 MARK2P16-201ENST00000605714 1723 ntBASIC19.66■□□□□ 0.74
USP54Q70EL1 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
USP54Q70EL1 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
USP54Q70EL1 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
USP54Q70EL1 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
USP54Q70EL1 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 MAGEA2-203ENST00000611557 2024 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
USP54Q70EL1 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.65■□□□□ 0.74
USP54Q70EL1 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
USP54Q70EL1 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.65■□□□□ 0.74
USP54Q70EL1 C2orf70-201ENST00000329615 731 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
USP54Q70EL1 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USP54Q70EL1 AL627231.1-201ENST00000394467 1125 ntBASIC19.65■□□□□ 0.74
USP54Q70EL1 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP54Q70EL1 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC19.65■□□□□ 0.74
USP54Q70EL1 AL807761.2-201ENST00000422849 729 ntBASIC19.65■□□□□ 0.74
USP54Q70EL1 FKBP11-202ENST00000444214 630 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 DCST1-AS1-201ENST00000452962 822 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC19.65■□□□□ 0.74
USP54Q70EL1 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC19.65■□□□□ 0.74
USP54Q70EL1 AC015917.2-201ENST00000580714 493 ntTSL 3 BASIC19.65■□□□□ 0.74
USP54Q70EL1 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
USP54Q70EL1 AC073911.3-201ENST00000624401 631 ntBASIC19.65■□□□□ 0.74
USP54Q70EL1 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP54Q70EL1 CD68-202ENST00000380498 1771 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP54Q70EL1 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP54Q70EL1 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 CNTNAP2-225ENST00000639247 2064 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
USP54Q70EL1 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
USP54Q70EL1 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP54Q70EL1 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 HVCN1-203ENST00000439744 1215 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 CD164-210ENST00000512821 964 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 POLD4-208ENST00000532830 904 ntTSL 3 BASIC19.65■□□□□ 0.74
USP54Q70EL1 AC007376.2-201ENST00000556271 540 ntTSL 3 BASIC19.65■□□□□ 0.74
USP54Q70EL1 AC020763.1-201ENST00000567186 551 ntTSL 4 BASIC19.65■□□□□ 0.74
USP54Q70EL1 ELP5-212ENST00000574255 671 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
USP54Q70EL1 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC19.65■□□□□ 0.74
USP54Q70EL1 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.64■□□□□ 0.74
USP54Q70EL1 ARPC1A-201ENST00000262942 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP54Q70EL1 AP002353.1-201ENST00000528257 1599 ntBASIC19.64■□□□□ 0.74
USP54Q70EL1 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP54Q70EL1 CCNH-201ENST00000256897 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP54Q70EL1 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
USP54Q70EL1 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC19.64■□□□□ 0.74
USP54Q70EL1 NOP14-AS1-201ENST00000503709 1616 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
USP54Q70EL1 SERPINB9P1-202ENST00000545177 1375 ntTSL 3 BASIC19.64■□□□□ 0.74
USP54Q70EL1 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
USP54Q70EL1 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC19.64■□□□□ 0.73
USP54Q70EL1 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 IGF2-201ENST00000381389 1023 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC19.64■□□□□ 0.73
USP54Q70EL1 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 SNHG21-204ENST00000559366 674 ntTSL 2 BASIC19.64■□□□□ 0.73
USP54Q70EL1 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC19.64■□□□□ 0.73
USP54Q70EL1 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
USP54Q70EL1 LTB4R2-202ENST00000528054 3092 ntBASIC19.64■□□□□ 0.73
USP54Q70EL1 ETV5-206ENST00000434744 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC19.64■□□□□ 0.73
USP54Q70EL1 HCG27-201ENST00000383331 1720 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
USP54Q70EL1 LINC01815-202ENST00000641468 1409 ntBASIC19.64■□□□□ 0.73
USP54Q70EL1 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.63■□□□□ 0.73
USP54Q70EL1 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
USP54Q70EL1 MIR645-201ENST00000385283 94 ntBASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms