Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ABBA01031660.1-201ENST00000635219 756 ntBASIC18.42■□□□□ 0.54
VPS53Q5VIR6 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 REXO1L2P-201ENST00000425429 2069 ntBASIC18.42■□□□□ 0.54
VPS53Q5VIR6 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC18.42■□□□□ 0.54
VPS53Q5VIR6 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AGER-206ENST00000375070 1463 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AL157414.3-201ENST00000624276 1954 ntBASIC18.41■□□□□ 0.54
VPS53Q5VIR6 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 NME2P1-201ENST00000426182 414 ntBASIC18.41■□□□□ 0.54
VPS53Q5VIR6 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 RN7SL752P-201ENST00000463779 287 ntBASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AC005225.4-201ENST00000557330 545 ntBASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AC027307.3-201ENST00000594262 1100 ntBASIC18.41■□□□□ 0.54
VPS53Q5VIR6 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AL645728.2-202ENST00000641679 227 ntBASIC18.41■□□□□ 0.54
VPS53Q5VIR6 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AC093525.8-201ENST00000624099 1342 ntBASIC18.41■□□□□ 0.54
VPS53Q5VIR6 RGPD5-202ENST00000272454 2907 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
VPS53Q5VIR6 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AC005264.1-201ENST00000587587 2319 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AC068418.2-201ENST00000577309 3703 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 SOCS2P1-201ENST00000417727 557 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 TMEM14DP-201ENST00000422205 345 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AP001582.1-201ENST00000525856 295 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 SAMD11P1-201ENST00000571429 661 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AC093813.1-201ENST00000605066 256 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 AC012645.4-201ENST00000610691 1061 ntBASIC18.4■□□□□ 0.54
VPS53Q5VIR6 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
VPS53Q5VIR6 FAM45BP-202ENST00000592932 1624 ntBASIC18.4■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms