Protein–RNA interactions for Protein: Q02539

HIST1H1A, Histone H1.1, humanhuman

Predicted RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H1AQ02539 COL20A1-203ENST00000422202 8097 ntAPPRIS ALT2 TSL 5 BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 CELP-203ENST00000624767 2414 ntTSL 5 BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 ADAM15-206ENST00000368412 2804 ntAPPRIS ALT2 TSL 1 (best) BASIC11.78□□□□□ -0.52
HIST1H1AQ02539 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 TMEM200A-204ENST00000617887 2899 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 TCAF2-202ENST00000411935 2906 ntTSL 5 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 ARID4B-201ENST00000264183 4995 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 CYP1B1-AS1-201ENST00000413828 1781 ntTSL 5 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 FSTL4-201ENST00000265342 5419 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 ADGRL1-201ENST00000340736 7853 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 GSN-215ENST00000545652 2428 ntTSL 2 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC11.77□□□□□ -0.52
HIST1H1AQ02539 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 POFUT1-202ENST00000375749 5235 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AC091951.1-201ENST00000512854 2465 ntBASIC11.77□□□□□ -0.53
HIST1H1AQ02539 WASHC2C-201ENST00000336378 4669 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 STK33-217ENST00000534493 1895 ntTSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 NFATC4-219ENST00000555167 4364 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AL607033.1-201ENST00000623900 1599 ntBASIC11.77□□□□□ -0.53
HIST1H1AQ02539 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AC211486.1-202ENST00000416371 468 ntBASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AP000347.1-202ENST00000435868 847 ntBASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AC211476.1-201ENST00000503899 468 ntBASIC11.77□□□□□ -0.53
HIST1H1AQ02539 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 YBX1P5-201ENST00000509441 847 ntBASIC11.77□□□□□ -0.53
HIST1H1AQ02539 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 TMEM2-202ENST00000377044 6523 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 NCOR2-202ENST00000404121 7175 ntTSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 MAP2K1-201ENST00000307102 3410 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 ABCA2-203ENST00000371605 8151 ntAPPRIS ALT2 TSL 2 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 ATRN-202ENST00000446916 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 CALD1-222ENST00000495522 2199 ntTSL 5 BASIC11.77□□□□□ -0.53
HIST1H1AQ02539 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 SLC4A5-201ENST00000346834 6233 ntAPPRIS P4 TSL 5 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 EFR3B-202ENST00000401432 5162 ntTSL 2 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 IMPDH1P4-201ENST00000445028 1534 ntBASIC11.76□□□□□ -0.53
HIST1H1AQ02539 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 EMC10-201ENST00000334976 9446 ntAPPRIS P3 TSL 1 (best) BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 KLHDC8A-202ENST00000367156 3177 ntAPPRIS P1 TSL 2 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 AMT-204ENST00000427987 1646 ntTSL 5 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC11.76□□□□□ -0.53
HIST1H1AQ02539 POLR1D-207ENST00000621089 1606 ntTSL 1 (best) BASIC11.76□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms