Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 COG3-201ENST00000349995 4498 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
RNF4P78317 AC013268.4-201ENST00000637413 2228 ntBASIC14.13□□□□□ -0.15
RNF4P78317 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 LSM5-207ENST00000410044 687 ntTSL 3 BASIC14.13□□□□□ -0.15
RNF4P78317 ARSEP1-201ENST00000420443 635 ntBASIC14.13□□□□□ -0.15
RNF4P78317 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 C2orf27AP3-201ENST00000434123 579 ntBASIC14.13□□□□□ -0.15
RNF4P78317 AC016694.1-201ENST00000434179 700 ntBASIC14.13□□□□□ -0.15
RNF4P78317 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.13□□□□□ -0.15
RNF4P78317 AC007551.1-201ENST00000457394 519 ntBASIC14.13□□□□□ -0.15
RNF4P78317 FTH1P14-201ENST00000482930 551 ntBASIC14.13□□□□□ -0.15
RNF4P78317 IGHV3-71-201ENST00000523324 359 ntBASIC14.13□□□□□ -0.15
RNF4P78317 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.13□□□□□ -0.15
RNF4P78317 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 AC017083.2-201ENST00000608069 979 ntBASIC14.13□□□□□ -0.15
RNF4P78317 AL354718.3-201ENST00000616414 581 ntBASIC14.13□□□□□ -0.15
RNF4P78317 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 CR382287.1-201ENST00000623954 586 ntBASIC14.13□□□□□ -0.15
RNF4P78317 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
RNF4P78317 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 HNF1A-215ENST00000615446 2344 ntTSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
RNF4P78317 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RNF4P78317 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC14.13□□□□□ -0.15
RNF4P78317 SLC9A7P1-202ENST00000556476 2239 ntBASIC14.13□□□□□ -0.15
RNF4P78317 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
RNF4P78317 AL157414.3-201ENST00000624276 1954 ntBASIC14.13□□□□□ -0.15
RNF4P78317 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RNF4P78317 CELP-203ENST00000624767 2414 ntTSL 5 BASIC14.12□□□□□ -0.15
RNF4P78317 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
RNF4P78317 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC14.12□□□□□ -0.15
RNF4P78317 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 HLA-K-203ENST00000430151 1046 ntBASIC14.12□□□□□ -0.15
RNF4P78317 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC14.12□□□□□ -0.15
RNF4P78317 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC14.12□□□□□ -0.15
RNF4P78317 AC022616.1-201ENST00000518688 554 ntBASIC14.12□□□□□ -0.15
RNF4P78317 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RNF4P78317 AC008969.1-205ENST00000553254 876 ntTSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 GNRHR2-203ENST00000581100 1187 ntBASIC14.12□□□□□ -0.15
RNF4P78317 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.12□□□□□ -0.15
RNF4P78317 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC14.12□□□□□ -0.15
RNF4P78317 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 AP000845.1-201ENST00000581677 2131 ntBASIC14.12□□□□□ -0.15
RNF4P78317 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
RNF4P78317 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RNF4P78317 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms