Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 MRC2-202ENST00000446119 3201 ntTSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.04■□□□□ -0
PKNOX1P55347 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 AC097359.2-201ENST00000604992 2389 ntBASIC15.04■□□□□ -0
PKNOX1P55347 SERPINE3-204ENST00000524365 2293 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 ZFP64-201ENST00000216923 3264 ntTSL 1 (best) BASIC15.04■□□□□ -0
PKNOX1P55347 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.04■□□□□ -0
PKNOX1P55347 BX640514.1-201ENST00000583223 1918 ntBASIC15.04■□□□□ -0
PKNOX1P55347 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 RPL15-201ENST00000307839 2730 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 AC027601.5-201ENST00000624065 2482 ntBASIC15.03■□□□□ -0
PKNOX1P55347 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC15.03■□□□□ -0
PKNOX1P55347 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
PKNOX1P55347 CCT3-201ENST00000295688 2150 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 AC104457.1-201ENST00000401024 814 ntBASIC15.03■□□□□ -0
PKNOX1P55347 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 TOMM22P5-201ENST00000416399 439 ntBASIC15.03■□□□□ -0
PKNOX1P55347 AP006288.1-201ENST00000446065 395 ntBASIC15.03■□□□□ -0
PKNOX1P55347 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 AP000845.1-201ENST00000581677 2131 ntBASIC15.03■□□□□ -0
PKNOX1P55347 AC074044.1-201ENST00000609673 707 ntBASIC15.03■□□□□ -0
PKNOX1P55347 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC15.03■□□□□ -0
PKNOX1P55347 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC15.03■□□□□ -0
PKNOX1P55347 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC15.03■□□□□ -0
PKNOX1P55347 CAMSAP1-203ENST00000409386 5730 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 SEPT6-204ENST00000360156 2609 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 CXorf36-201ENST00000377934 2513 ntTSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 GPN1-201ENST00000264718 2496 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.03■□□□□ -0
PKNOX1P55347 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC15.03■□□□□ -0
PKNOX1P55347 ACTN2-206ENST00000542672 4906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 PFKFB4-201ENST00000232375 3586 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.03■□□□□ -0
PKNOX1P55347 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
PKNOX1P55347 SPATA16-201ENST00000351008 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.02■□□□□ -0
PKNOX1P55347 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.02■□□□□ -0
PKNOX1P55347 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
PKNOX1P55347 CYB5D2-201ENST00000301391 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC15.02■□□□□ -0
PKNOX1P55347 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC15.02■□□□□ -0
PKNOX1P55347 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC15.02■□□□□ -0
PKNOX1P55347 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.02■□□□□ -0
PKNOX1P55347 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
PKNOX1P55347 PFN2-205ENST00000461868 613 ntTSL 2 BASIC15.02■□□□□ -0
PKNOX1P55347 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC15.02■□□□□ -0
PKNOX1P55347 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.02■□□□□ -0
PKNOX1P55347 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.02■□□□□ -0
PKNOX1P55347 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC15.02■□□□□ -0
PKNOX1P55347 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.02■□□□□ -0
PKNOX1P55347 AC025181.2-201ENST00000606994 802 ntBASIC15.02■□□□□ -0
PKNOX1P55347 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.02■□□□□ -0
PKNOX1P55347 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC15.02■□□□□ -0
PKNOX1P55347 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.02■□□□□ -0
PKNOX1P55347 ZNF596-201ENST00000308811 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 NOC2L-201ENST00000327044 2790 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
PKNOX1P55347 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms