Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 ZNF890P-202ENST00000530367 1156 ntBASIC13.47□□□□□ -0.25
CX3CR1P49238 RAB35-202ENST00000534951 939 ntTSL 2 BASIC13.47□□□□□ -0.25
CX3CR1P49238 RPL28-205ENST00000558131 444 ntTSL 5 BASIC13.47□□□□□ -0.25
CX3CR1P49238 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CX3CR1P49238 AL590560.3-201ENST00000623350 461 ntBASIC13.47□□□□□ -0.25
CX3CR1P49238 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC13.47□□□□□ -0.25
CX3CR1P49238 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CX3CR1P49238 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
CX3CR1P49238 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CX3CR1P49238 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 ZBTB45P1-201ENST00000452761 1456 ntBASIC13.47□□□□□ -0.25
CX3CR1P49238 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC13.47□□□□□ -0.25
CX3CR1P49238 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CX3CR1P49238 AC104581.4-201ENST00000623126 3052 ntBASIC13.47□□□□□ -0.25
CX3CR1P49238 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.47□□□□□ -0.25
CX3CR1P49238 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CX3CR1P49238 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC13.47□□□□□ -0.25
CX3CR1P49238 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
CX3CR1P49238 ZNF618-201ENST00000288466 9109 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 SERHL2-203ENST00000340239 1315 ntTSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
CX3CR1P49238 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC13.46□□□□□ -0.25
CX3CR1P49238 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 AC241585.1-201ENST00000433527 519 ntBASIC13.46□□□□□ -0.25
CX3CR1P49238 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.46□□□□□ -0.25
CX3CR1P49238 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.46□□□□□ -0.25
CX3CR1P49238 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC13.46□□□□□ -0.25
CX3CR1P49238 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC13.46□□□□□ -0.25
CX3CR1P49238 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 SERF2-217ENST00000630046 862 ntTSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 RBM47-203ENST00000381795 4473 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
CX3CR1P49238 AAK1-202ENST00000409068 2606 ntTSL 2 BASIC13.46□□□□□ -0.25
CX3CR1P49238 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 IRF4-201ENST00000380956 5331 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CX3CR1P49238 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.26
CX3CR1P49238 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 UBAP1-202ENST00000359544 2535 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC13.46□□□□□ -0.26
CX3CR1P49238 AGPAT3-205ENST00000398063 5767 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 ADORA1-201ENST00000309502 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
CX3CR1P49238 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CX3CR1P49238 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CX3CR1P49238 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
CX3CR1P49238 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC13.45□□□□□ -0.26
CX3CR1P49238 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.45□□□□□ -0.26
CX3CR1P49238 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 KRT18P28-201ENST00000453838 1332 ntBASIC13.45□□□□□ -0.26
CX3CR1P49238 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC13.45□□□□□ -0.26
CX3CR1P49238 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.45□□□□□ -0.26
CX3CR1P49238 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.45□□□□□ -0.26
CX3CR1P49238 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
CX3CR1P49238 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.45□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms