Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 AC010096.1-201ENST00000443897 1709 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 TEKT4P2-202ENST00000559466 1312 ntBASIC17.9■□□□□ 0.46
BRCA1P38398 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.9■□□□□ 0.46
BRCA1P38398 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 AL121757.1-201ENST00000430097 1836 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 SGCE-202ENST00000415788 1871 ntTSL 2 BASIC17.9■□□□□ 0.46
BRCA1P38398 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 CALD1-206ENST00000424922 2124 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 BSDC1-203ENST00000419121 1473 ntTSL 2 BASIC17.9■□□□□ 0.46
BRCA1P38398 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 CRIP1-202ENST00000392531 485 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
BRCA1P38398 AC128689.1-202ENST00000459861 827 ntTSL 3 BASIC17.9■□□□□ 0.46
BRCA1P38398 ZNF576-205ENST00000529930 830 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
BRCA1P38398 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC17.9■□□□□ 0.46
BRCA1P38398 AC023421.2-201ENST00000589510 313 ntTSL 5 BASIC17.9■□□□□ 0.46
BRCA1P38398 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC17.9■□□□□ 0.46
BRCA1P38398 DUSP22-213ENST00000605035 1231 ntTSL 2 BASIC17.9■□□□□ 0.46
BRCA1P38398 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 CCL18-201ENST00000616054 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
BRCA1P38398 AP002353.1-201ENST00000528257 1599 ntBASIC17.9■□□□□ 0.46
BRCA1P38398 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
BRCA1P38398 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC17.89■□□□□ 0.46
BRCA1P38398 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
BRCA1P38398 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.46
BRCA1P38398 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 OPRM1-201ENST00000229768 1465 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 OPRM1-207ENST00000428397 1481 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 RPL13-204ENST00000452368 1455 ntTSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 PGAP2-227ENST00000496834 1530 ntTSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 ENDOU-203ENST00000545824 1513 ntTSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC17.89■□□□□ 0.45
BRCA1P38398 WASIR1-201ENST00000399966 1054 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 AC112721.1-201ENST00000409162 588 ntTSL 3 BASIC17.89■□□□□ 0.45
BRCA1P38398 AL391839.2-201ENST00000412085 383 ntTSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 NSD2-209ENST00000436793 835 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 KCNK16-204ENST00000437525 981 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 AL583839.1-201ENST00000445280 691 ntTSL 3 BASIC17.89■□□□□ 0.45
BRCA1P38398 AL451000.1-201ENST00000451300 1186 ntBASIC17.89■□□□□ 0.45
BRCA1P38398 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 RN7SL582P-201ENST00000491078 279 ntBASIC17.89■□□□□ 0.45
BRCA1P38398 RN7SL564P-201ENST00000496309 250 ntBASIC17.89■□□□□ 0.45
BRCA1P38398 AL928742.1-201ENST00000497397 548 ntTSL 4 BASIC17.89■□□□□ 0.45
BRCA1P38398 ZNF677-204ENST00000594681 935 ntTSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 HERPUD1-202ENST00000344114 1388 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 GINS3-203ENST00000426538 1728 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 LETMD1-201ENST00000262055 2112 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 CRYL1-201ENST00000298248 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17.89■□□□□ 0.45
BRCA1P38398 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
BRCA1P38398 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
BRCA1P38398 AC021305.1-201ENST00000520656 1514 ntBASIC17.89■□□□□ 0.45
BRCA1P38398 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 ACTG1P19-201ENST00000418987 1116 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 PPP1R2P4-201ENST00000424051 595 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC17.88■□□□□ 0.45
BRCA1P38398 AC003043.1-201ENST00000588260 337 ntTSL 3 BASIC17.88■□□□□ 0.45
BRCA1P38398 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC17.88■□□□□ 0.45
BRCA1P38398 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC17.88■□□□□ 0.45
BRCA1P38398 RARS-210ENST00000626454 177 ntTSL 5 BASIC17.88■□□□□ 0.45
BRCA1P38398 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC17.88■□□□□ 0.45
BRCA1P38398 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 UBOX5-AS1-201ENST00000446537 1792 ntTSL 2 BASIC17.88■□□□□ 0.45
BRCA1P38398 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.88■□□□□ 0.45
BRCA1P38398 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
BRCA1P38398 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC17.88■□□□□ 0.45
BRCA1P38398 KHSRPP1-201ENST00000427983 1768 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 PIFO-201ENST00000369737 746 ntTSL 2 BASIC17.88■□□□□ 0.45
BRCA1P38398 CHCHD2P2-201ENST00000503744 321 ntBASIC17.88■□□□□ 0.45
BRCA1P38398 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms